FileOrganization: overview_scan1.xml

File overview_scan1.xml, 3.0 KB (added by dbrentw, 5 years ago)

Example MS1 overview scan data

Line 
1<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
2<!-- XML of ScanFeatures.java -->               
3<scanFeatures Id="1">
4        <!-- For "overview" scans (e.g. Scan 1 for Direct Infusion and MS Profile and Scan 0 for TIM) all peaks are precursor peaks  -->
5    <!-- XML of Peak.java -->
6        <peak id="9" intensity="104233.8671875" isPrecursor="true" mz="871.7009887695312" precursorCharge="4" precursorIntensity="449901.28125" precursorMz="871.7000122070312" relativeIntensity="0.009734870481200246">
7        <doubleProp/>
8        <integerProp/>
9        <stringProp/>
10    </peak>
11<!-- ******************** ADDITIONAL ROWS REMOVED ************************************* -->
12    <peak id="129" intensity="128594.6171875" isPrecursor="true" mz="1089.0989990234375" precursorCharge="2" precursorIntensity="1549634.125" precursorMz="1089.0999755859375" relativeIntensity="0.010871771404209767">
13        <doubleProp/>
14        <integerProp/>
15        <stringProp/>
16    </peak>
17        <!-- XML of Feature.java -->
18    <feature>
19                <!-- XML of GlycanFeature.java (extends Feature) -->
20        <glycanFeature annId="478" charge="4" dev="34.57828933292843" id="34461" mz="871.6708478827501" preId="-1" type="org.grits.toolbox.ms.om.data.GlycanFeature" seq="....">
21                        <!-- XML of FeatureSelection.java -->
22            <featureSelection manually_selected="false" rowId="9" selected="true"/>
23                        <!-- XML of IonAdduct.java (extends Ion.java) -->
24            <Ion charge="1" label="Na" mass="22.98976967" name="Sodium">
25                <count>4</count>
26            </Ion>
27            <booleanProp/>
28            <doubleProp>
29                           <!-- CustomExtraData for this feature (see dataHeader.xml for meta-info for featureCustomExtraData) -->
30               <item>
31                    <key>counting_score</key>
32                    <value>0.06823720552396426</value>
33                </item>
34                <item>
35                    <key>intensity_score</key>
36                    <value>0.19018353235516325</value>
37                </item>
38            </doubleProp>
39            <integerProp/>
40            <stringProp/>
41        </glycanFeature>
42    </feature>
43<!-- ******************** ADDITIONAL ROWS REMOVED ************************************* -->
44    <feature>
45        <glycanFeature annId="21" charge="4" dev="291.8346897160471" id="1217" mz="1088.7812548837499" preId="-1" type="org.grits.toolbox.ms.om.data.GlycanFeature" seq="....">
46            <featureSelection manually_selected="false" rowId="129" selected="false"/>
47            <Ion charge="1" label="Na" mass="22.98976967" name="Sodium">
48                <count>4</count>
49            </Ion>
50            <booleanProp/>
51            <doubleProp>
52                <item>
53                    <key>counting_score</key>
54                    <value>0.11840796019900497</value>
55                </item>
56                <item>
57                    <key>intensity_score</key>
58                    <value>0.056777008939468764</value>
59                </item>
60            </doubleProp>
61            <integerProp/>
62            <stringProp/>
63        </glycanFeature>
64    </feature>
65</scanFeatures>