Milestone GRITS - 1.2 SR1

First service release of GRITS 1.2 will include the following major changes:

• Standard (#905)
  • Identify the standard peak to normalize against
  • Quantification in MS and merge
• Redesign of MS plugin (upload of multiple files) (#906)
  • Upload peaklist
  • List different MS files in the MS Properties
  • Integrated mzXML conversion (#907)
  • Invoke Joshua Klein software (#908)
  • GELATO pick file to annotate (#909)
• Interactive merge (link back to primary data) (#910)
• Additional analyte settings in GELATO (#896)
  • also include 293 for fully specified DB
  • is standard databases in the gelato settings + add customize column (is standard) (#911)
• Ability to "lock" manual selections (#813 and #844)
• Preferences for GELATO annotation settings (#339)
• Preferences for MS: make mass spec in own subtree (#565)
• Export for structures and fragments into images, SVG, gws (#912)
• Improved browsing of MS data (especially mzXML) – Scan hierarchy (#913)
• Document column headers (#816)
• Move MS files from .project.xml to msMetaData.xml (#545)
• Changing column order in Merged experiments (#433)
• Update MS Annotation properties (#786)
  • modify custom annotation
  • MS Annotation Properties page

There will also be many minor improvements:

• Separate intensity cut offs ms levels ms 1 vs ms2 (#228)
• MS data user guidelines (#186)
• Preference for number formats (#386)
• Fragment type in Annotation Editor Details View (#398)
• Issues with MS Annotation entry names (#531)
• Add color to protocol templates (required for Glycan Array module) (#884)
• Modify sample and experiment design ontology for Glycan Array module (#748)
• Migrate ProjectExplorerDialog to e4 (#775)
• Testing backwards compatibility for MS, Annotation, and Merge (#582, #584)
• Formal support of MALDI MS type (#611)
• Column size in summary view (#723)
• Delete doesn’t do cleanup (#871)
• Summary view – hide common annotations – also include #293 (#396)