Custom Query (905 matches)

The downloaded SourceSample is not properly filled.

The SourceSample has a list of Descriptors which is returned by the method getIsDescribedBy(). This list of Descriptors can have several SimpleDescriptors and several GroupDescriptors. Inside each GroupDescriptor there is a list of SimpleDescriptors. So, say for example a groupDescriptor whose GroupType is "Aliquot" has two SimpleDescriptors. One of these SimpleDescriptor has a SimpleType "Aliquot Id" and the other has SimpleType "Weight".

Problems :

1. The first problem is that right now these two SimpleDescriptors are not inside the same GroupDescriptor. Each of these SimpleDescriptor is inside an individual GroupDescriptor which is not right. Right now, these GroupDescriptors have exactly one SimpleDescriptor.

2. Also, these member SimpleDescriptors of a GroupDescriptor should appear only inside their respective GroupDescriptor.

For more see the attached screen shot below.

But there can be cases where multiple GroupDescriptors with same GroupType can appear more than one time, but in such cases the values of these SimpleDescriptors would be different. For example :

GroupDescriptor01 with GroupType "Destination" has following SimpleDescriptors :

SimpleDescriptor011 with SimpleType "Recipient" and value as "Pierce Lab" SimpleDescriptor012 with SimpleType "Delievery Date" and value as "12/22/2014"

and another GroupDescriptor

GroupDescriptor02 with GroupType "Destination" has following SimpleDescriptors :

SimpleDescriptor021 with SimpleType "Recipient" and value as "Smith Lab" SimpleDescriptor022 with SimpleType "Delievery Date" and value as "12/21/2014"​

And lastly, there can be cases where a GroupDescriptor has several SimpleDescriptors with same SimpleType but different values. For example :

GroupDescriptor03 with GroupType "Origin" has following SimpleDescriptors :

SimpleDescriptor031 with SimpleType "Originator" and value as "David" SimpleDescriptor032 with SimpleType "Originator" and value as "John" SimpleDescriptor033 with SimpleType "Originating Lab" and value as "David Lab"

These cases should be also be allowed when fixing this problem.

When applying the intensity cutoff filter for MS annotation, it appeared to have no impact.

If the user mistakenly specifies a full MS file but it doesn't contain an MS1 scan, that is invalid. Notify the user and don't create entry yet.