Opened 3 years ago

Closed 3 years ago

#1026 closed defect (fixed)

MS Annotation: TIM experiment in negative mode does not get any annotations

Reported by: sena Owned by: dbrentw
Priority: high Milestone: GRITS - 1.2 SR1
Component: MS annotation management Version: GRITS 1.2.x
Severity: major Keywords:
Cc:

Description

Here is the link to the mzxml file to be annotated:

https://www.dropbox.com/s/0w02c67ik8ynqi2/SK_HumanTracheaKS_reduced_%2BKera-I_water_TIM.mzXML?dl=0

GELATO settings should be changed to use Ion Settings: "-H" (max charge 6) instead of Sodium. Attached are also the database files to annotate against.

After GELATO annotation the table shows "0" annotated.

Attachments (2)

Kera I sulfo sialyl NEG.xml (2.7 KB) - added by sena 3 years ago.
Kera I Fucose NEG.xml (6.3 KB) - added by sena 3 years ago.

Download all attachments as: .zip

Change History (7)

Changed 3 years ago by sena

Attachment: Kera I sulfo sialyl NEG.xml added

Changed 3 years ago by sena

Attachment: Kera I Fucose NEG.xml added

comment:1 Changed 3 years ago by dbrentw

Status: assignedaccepted

comment:2 Changed 3 years ago by dbrentw

Priority: normalhigh

comment:3 Changed 3 years ago by dbrentw

Addressed initially in SVN revision [2745]

comment:4 Changed 3 years ago by dbrentw

Resolution: fixed
Status: acceptedreview

Resolved in recent SVN revisions

comment:5 Changed 3 years ago by sena

Status: reviewclosed
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