Opened 3 years ago

Closed 3 years ago

#1028 closed defect (worksforme)

MS Annotation: TIM annotation entry does not open

Reported by: sena Owned by: dbrentw
Priority: normal Milestone: GRITS - 1.2 SR1
Component: MS annotation management Version: GRITS 1.2.x
Severity: critical Keywords:
Cc:

Description

I have run a GELATO annotation with TIM data. Although the annotation seems to finish up (new entry is being created), I am getting exceptions in the log related to opening the spectra view and nothing shows up in the editor area.

I've realized this only happens if I have uploaded a full ms external quantification file to the MS entry before running the GELATO annotation. If I remove the full ms file from the MS entry, the previously generated GELATO entry opens up fine.

I am getting the following exception in the log:

Ah ah. Not implemented
java.lang.Exception: Ah ah. Not implemented

at org.grits.toolbox.entry.ms.views.tabbed.MassSpecSpectraView.getCurrentScanData(MassSpecSpectraView.java:307)
at org.grits.toolbox.entry.ms.views.tabbed.MassSpecSpectraView.initSpectralViewerData(MassSpecSpectraView.java:385)
at org.grits.toolbox.entry.ms.annotation.views.tabbed.MSAnnotationSpectraView.initSpectralViewerData(MSAnnotationSpectraView.java:47)
at org.grits.toolbox.entry.ms.views.tabbed.MassSpecSpectraView.initializeChartData(MassSpecSpectraView.java:591)
at org.grits.toolbox.entry.ms.views.tabbed.MassSpecSpectraView.createThisChart(MassSpecSpectraView.java:708)
at org.grits.toolbox.entry.ms.views.tabbed.MassSpecSpectraView.createChart(MassSpecSpectraView.java:681)

Change History (4)

comment:1 Changed 3 years ago by dbrentw

Resolution: fixed
Status: assignedreview

Resolved in SVN revision [2751]

comment:2 Changed 3 years ago by sena

Resolution: fixed
Status: reviewassigned

I am still getting the same exception when I have an external quant. files. Even after removing the external quantification file, it does not open the annotation entry.

comment:3 Changed 3 years ago by sena

Resolution: worksforme
Status: assignedreview

I was using an empty file for annotation. It is working.

comment:4 Changed 3 years ago by sena

Status: reviewclosed
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