Opened 3 years ago

Closed 3 years ago

#1032 closed defect (fixed)

MS Editor: Exceptions while opening annotation file in the editor

Reported by: sena Owned by: dbrentw
Priority: normal Milestone: GRITS - 1.2 SR1
Component: GRITS core Version: GRITS 1.2.x
Severity: major Keywords:
Cc:

Description

I am getting the following exceptions while opening an MS entry and double-clicking on the annotation mzxml file. I tried to open Direct infusion experiment (N-Glycans-A) from the demo workspace.

[ERROR] 2017-10-16 13:47:17,283 [org.grits.toolbox.ms.file.reader.impl.MzXmlReader getScanData 1201] -
java.lang.NullPointerException

at org.grits.toolbox.ms.file.reader.impl.MzXmlReader.getScanData(MzXmlReader.java:1184)
at org.grits.toolbox.ms.file.reader.impl.MzXmlReader.readMzXmlFile(MzXmlReader.java:105)
at org.grits.toolbox.ms.file.reader.impl.MzXmlReader.readMSFile(MzXmlReader.java:1353)
at org.grits.toolbox.entry.ms.process.loader.MassSpecTableDataProcessor.readDataFromFile(MassSpecTableDataProcessor.java:881)
at org.grits.toolbox.display.control.table.process.TableDataProcessorRunner$1.threadStart(TableDataProcessorRunner.java:38)
at org.grits.toolbox.widgets.progress.ProgressThread.run(ProgressThread.java:20)

Change History (3)

comment:1 Changed 3 years ago by sena

As a result, the scan table is empty if you double-click on any scan.

comment:2 Changed 3 years ago by sena

Resolution: fixed
Status: assignedreview

fixed in revision [2759]

comment:3 Changed 3 years ago by sena

Status: reviewclosed

tested in revision [2761]

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