Opened 3 years ago

Last modified 2 years ago

#1087 assigned defect

GELATO: annotation fails for truncated mzxml files

Reported by: dbrentw Owned by: dbrentw
Priority: normal Milestone: GRITS - 1.2 SR3
Component: MS annotation management Version: GRITS 1.2.x
Severity: critical Keywords:


If you truncate an mzxml file, gelato fails to create annotation, at least sometimes. See attached mzxml file that was trimmed.

Change History (4)

comment:2 Changed 3 years ago by dbrentw

Milestone: GRITS - 1.2 SR2GRITS - 1.2 SR3

It turns out that this particular bug is related to trimming such that the first scan is MS/MS. If you trim this file where the first scan is MS 1 (e.g. 22), it seems to work fine.

comment:3 Changed 2 years ago by dbrentw

Status: assignedaccepted

comment:4 Changed 2 years ago by dbrentw

Status: acceptedassigned
Note: See TracTickets for help on using tickets.