#1118 closed defect (fixed)

(Mass dialog) Other reducing end combinations not working

Reported by: Rene Ranzinger Owned by: Masaaki Matsubara
Priority: normal Milestone: Module - Glycan Builder 1.0
Component: Glycan Builder Version: GRITS 1.2.x
Severity: major Keywords:
Cc: Masaaki Matsubara

Description

  • Open Mass options dialog
  • select Reducing end “other…”
  • Type “a” ==> error message

Change History (6)

comment:1 Changed 18 months ago by Rene Ranzinger

From Masaaki: “a” is reserved for the acid modification. It is not in original residue dictionary but Shinichiro’s GlycanBuilder has it. It looks it is for a GlycoCT representation. Should we remove this modification?

comment:2 in reply to:  1 Changed 18 months ago by Rene Ranzinger

Replying to Rene Ranzinger:

From Masaaki: “a” is reserved for the acid modification. It is not in original residue dictionary but Shinichiro’s GlycanBuilder has it. It looks it is for a GlycoCT representation. Should we remove this modification?

The reducing end string is independent of the glycan part. In GWS it has its own place and for GlycoCT it would not be translated since its not considered part of the sugar. So any string combination is allowed but it should be restricted in length.

comment:3 Changed 18 months ago by Rene Ranzinger

Milestone: GRITS - 1.2 SR2Module - Glycan Builder 1.0

comment:4 Changed 18 months ago by Masaaki Matsubara

Status: assignedaccepted

Changed the restriction condition for reducing end name.
Currently, any string can be used for this except for one containing some symbols which cannot be parsed as a residue.

comment:5 Changed 18 months ago by Rene Ranzinger

Resolution: fixed
Status: acceptedreview

comment:6 Changed 17 months ago by Rene Ranzinger

Status: reviewclosed
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