#1132 closed defect (fixed)

(File part) Problems exporting/importing

Reported by: Rene Ranzinger Owned by: Masaaki Matsubara
Priority: normal Milestone: Module - Glycan Builder 1.0
Component: Glycan Builder Version: GRITS 1.2.x
Severity: major Keywords:
Cc: Masaaki Matsubara

Description

  • GAG structure (2nd row, 3rd column)

1.

  • select a IdoA
  • Export to sequence format, any
  • Import, any => only IdoA was exported not the structure

2.

  • select entire structure
  • Export to GlycoCT
  • Import from GlycoCT => error message

(also change the error message to "The glycan could not be imported."

3.

  • Same problem as with 1 for the image export

4.

  • Modifications and substitutions have a different background color

Change History (4)

comment:1 Changed 16 months ago by Masaaki Matsubara

Status: assignedaccepted
  1. Fixed. If user select a residue on a glycan, the glycan will be exported.
  1. It seems there is a problem in the GAG structure. Two GalNAcs in the GAG have "5S" but they have pyranose rings and the position 5 is used for ring. GlycoCT cannot handle substitution at ring oxygen.

Changed the error message to "The glycan could not be imported."

  1. Also fixed.
  1. Fixed. Also implemented transparent background for image output.
Version 0, edited 16 months ago by Masaaki Matsubara (next)

comment:2 Changed 16 months ago by Masaaki Matsubara

  1. Fixed. "5S" was a mistake of "6S" in dermatan sulfate.

comment:3 Changed 16 months ago by Masaaki Matsubara

Resolution: fixed
Status: acceptedreview

comment:4 Changed 16 months ago by Rene Ranzinger

Status: reviewclosed
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