Opened 6 years ago

Closed 5 years ago

#509 closed enhancement (fixed)

MS annotation + Merge: Add special peaks to the table

Reported by: Rene Ranzinger Owned by: dbrentw
Priority: highest Milestone: GRITS - 1.2
Component: MS annotation management Version: GRITS 1.0.x
Severity: critical Keywords:
Cc: dbrentw

Description

A preference is needed to allow creating special peaks (m/z values in the MS2 whose intensities need to be extracted from the mzXML file. For each annotation in the MS1 overview one column for each special peak is added.

Special peaks should also be included in the merge report but should hidden by default.

Change History (10)

comment:1 Changed 6 years ago by Rene Ranzinger

Owner: set to dbrentw
Status: newassigned

comment:2 Changed 6 years ago by dbrentw

Status: assignedaccepted

comment:3 Changed 6 years ago by dbrentw

Resolution: fixed
Status: acceptedreview

Initial commit in SVN revision 4866

comment:4 Changed 6 years ago by Rene Ranzinger

Milestone: GRITS - 1.1GRITS - 1.1 SR1

comment:5 Changed 6 years ago by Rene Ranzinger

Resolution: fixed
Status: reviewassigned

Summary of the discussion with Mindy today:

  • Remove the special peak upload from the MS upload
  • Special peaks becomes a optional function that the user can invoke similar to the filters in MS annotation
  • Preferences allow to create a named set of special peaks per MS level (e.g. for N-Glycans, for O-glycans for peptides)
  • The dialog for the optional "apply special peaks" function will look similar to the last page in the MS wizard except a drop down that allows to pick the set on top (drop down default value can be controlled by preferences as well)
  • When special peaks are applied they are persisted in the data structure (so they become accessible for merge)
  • It is possible to reapply special peaks in case user decides to choose a different configuration (will overwrite old special peaks)

comment:6 Changed 6 years ago by dbrentw

Status: assignedaccepted

comment:7 Changed 6 years ago by Rene Ranzinger

Milestone: GRITS - 1.1 SR1GRITS - 1.1 SR2

comment:8 Changed 6 years ago by dbrentw

First edition of the new version is ready for initial testing. SVN revision 1690

comment:9 Changed 6 years ago by dbrentw

Resolution: fixed
Status: acceptedreview

comment:10 Changed 5 years ago by Rene Ranzinger

Status: reviewclosed
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