Opened 6 years ago

Closed 5 years ago

#639 closed defect (fixed)

MS editor: Exceptions loading files from different msconvert version

Reported by: Rene Ranzinger Owned by: dbrentw
Priority: highest Milestone: GRITS - 1.2
Component: MS data management Version: GRITS 1.1.x
Severity: blocker Keywords:
Cc: dbrentw

Description

Trying to opens Osmans mouse data in GRITS we got exceptions "Unable to create tab" + Non working MS entries created. After converting his files using Stephanies MSconvert they are working. It seems that the newer msconvert (Osman) generate mzXML files that GRITS can not open. Similar things happen with Mindys data.

Change History (8)

comment:1 Changed 6 years ago by Rene Ranzinger

Owner: set to dbrentw
Status: new → assigned

comment:2 Changed 6 years ago by dbrentw

Status: assigned → accepted

comment:3 Changed 6 years ago by dbrentw

Resolution: → fixed
Status: accepted → review

Resolved (i hope) in SVN revisions 1444, 1389, 1388, 1387

comment:4 Changed 6 years ago by Rene Ranzinger

Resolution: fixed
Status: review → assigned

Opening these files will still cause errors in the log file (see attached). Since we know the reasons that should be only warnings. The other problem is that trying to open this scans (e.g. 194) in GRITS will result in the "error creating spectra tab". Since we know the reason that should either trigger a different message (e.g. No spectrum available since this scans has no peaks) or it should show an empty spectrum (thats what SeeMS does).

comment:5 Changed 6 years ago by dbrentw

Status: assigned → accepted

comment:6 Changed 6 years ago by Rene Ranzinger

Milestone: GRITS - 1.1 SR1 → GRITS - 1.1 SR2

comment:7 Changed 5 years ago by dbrentw

Resolution: → fixed
Status: accepted → review

Resolved in SVN revision 1971

comment:8 Changed 5 years ago by Rene Ranzinger

Status: review → closed
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