Opened 4 years ago

Closed 4 years ago

#647 closed enhancement (fixed)

Glycan array: Antenna filter

Reported by: Rene Ranzinger Owned by: sena
Priority: normal Milestone: Module - Glycan array analysis
Component: Glycan Array management Version: GRITS 1.1.x
Severity: major Keywords:
Cc: sena

Description

Add a filter/sorter that allows to handle structures based on their number of antennas. Definition of antenna:

  • a terminal MS
  • if the terminal MS is in the exclusion list (for example to exclude fuc residues)and if parent residue has another MS child, it is not counted as terminal
  • if all childs or a residue are in the exclusion list one will be counted as terminal

In addition bisection should be disabled or enable based on user preference.

Change History (4)

comment:1 Changed 4 years ago by Rene Ranzinger

Owner: set to Rene Ranzinger
Status: newaccepted

comment:2 Changed 4 years ago by Rene Ranzinger

Owner: changed from Rene Ranzinger to sena
Status: acceptedassigned

Implemented in [1161]. To use the filter add the following definition in the filter.xml:

<antennaFilter max="0" min="0" label="# Antenna" name="# Antenna" filterBisection="true">

<monosaccharide allowSubstituents="true" allowModifications="false">

<sequence>RES

1b:a-lgal-HEX-1:5</sequence>

</monosaccharide>

</antennaFilter>

comment:3 Changed 4 years ago by sena

Resolution: fixed
Status: assignedreview

added to the xml file.

comment:4 Changed 4 years ago by Rene Ranzinger

Status: reviewclosed
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