Opened 4 years ago

Closed 4 years ago

#651 closed enhancement (fixed)

Glycan array: Linkage filter

Reported by: Rene Ranzinger Owned by: sena
Priority: normal Milestone: Module - Glycan array analysis
Component: Glycan Array management Version: GRITS 1.1.x
Severity: major Keywords:
Cc: sena

Description

Add a filter/sorter that allows to handle structures based on the linkages of specified monosaccharides. The filter will contain a set of predefined linkage pattern of interest and the user can pick on pattern that he wants to filter against.

Change History (4)

comment:1 Changed 4 years ago by Rene Ranzinger

Owner: set to Rene Ranzinger
Status: newaccepted

comment:2 Changed 4 years ago by Rene Ranzinger

Owner: changed from Rene Ranzinger to sena
Status: acceptedassigned

Implemented in [1197]. To use the filter add the following definition in the filter.xml:

<linkageFilter name="Sialic acide linkage" label="Sia linkage" chosenLinkagePattern="Sialic acid: 3" terminal="false">

<description>Silic acid linkage filter</description>
<monosaccharide allowSubstituents="true" allowModifications="true">

<sequence>RES

1b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d
</sequence>

</monosaccharide>
<linkagePattern>Sialic acid: 3</linkagePattern>
<linkagePattern>Sialic acid: 6</linkagePattern>
<linkagePattern>Sialic acid: 3,6</linkagePattern>

</linkageFilter>

comment:3 Changed 4 years ago by sena

Resolution: fixed
Status: assignedreview

added into the xml.

comment:4 Changed 4 years ago by Rene Ranzinger

Status: reviewclosed
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