Opened 6 years ago

Closed 6 years ago

#807 closed task (fixed)

Annotation Editor: need export into Byonic Database

Reported by: sena Owned by: sena
Priority: normal Milestone: GRITS - 1.2
Component: MS annotation management Version: GRITS 1.1.x
Severity: major Keywords:
Cc: dbrentw

Description

Need an export functionality which will export annotation table into a byonic database.

Sample byonic entry: (composition counts and the mass)
HexNAc(3)Hex(4)NeuAc(1) % 1548.544832

Also a preference page should be created to allow users to add/delete compositions (HexNAc, Hex etc.) to search or change their default order. Default list of compositions should be kept in preferences.

Attachments (1)

B.GELATO.2016.3.4_1412 (Scan 1, MS1).txt​ (3.7 KB) - added by dbrentw 6 years ago.
Test export

Download all attachments as: .zip

Change History (9)

comment:1 Changed 6 years ago by sena

Resolution: → fixed
Status: new → review

implemented in revision "1924"

comment:2 Changed 6 years ago by Rene Ranzinger

Resolution: fixed
Status: review → assigned

comment:3 Changed 6 years ago by Rene Ranzinger

Cc: dbrentw added
Owner: changed from sena to dbrentw

Brent needs to test the databases with byonic

comment:4 Changed 6 years ago by Rene Ranzinger

Component: GRITS core → MS annotation management

comment:5 Changed 6 years ago by dbrentw

Status: assigned → accepted

Changed 6 years ago by dbrentw

Attachment: B.GELATO.2016.3.4_1412 (Scan 1, MS1).txt​ added

Test export

comment:6 Changed 6 years ago by dbrentw

Owner: changed from dbrentw to sena
Status: accepted → assigned

I tested the database with Byonic. I ran a search and it identified many glycopeptides.

comment:7 Changed 6 years ago by sena

Resolution: → fixed
Status: assigned → review

comment:8 Changed 6 years ago by Rene Ranzinger

Status: review → closed
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