Opened 4 years ago

Closed 4 years ago

#892 closed defect (fixed)

Annotation Editor: Bisection not working for topology

Reported by: Rene Ranzinger Owned by: dbrentw
Priority: normal Milestone: GRITS - 1.2
Component: MS annotation management Version: GRITS 1.1.x
Severity: major Keywords:
Cc: dbrentw, sena

Description

Mindy reported a problem that the bisection column for topology structures is not filled correctly (see image). If the corresponding fully defined structure is used its working.

Attachments (1)

thumbnail_etrlydt0.jpg.png​ (24.4 KB) - added by Rene Ranzinger 4 years ago.

Download all attachments as: .zip

Change History (5)

Changed 4 years ago by Rene Ranzinger

Attachment: thumbnail_etrlydt0.jpg.png​ added

comment:1 Changed 4 years ago by Rene Ranzinger

Owner: set to Rene Ranzinger
Status: new → accepted

comment:2 Changed 4 years ago by Rene Ranzinger

Cc: dbrentw sena added
Owner: changed from Rene Ranzinger to dbrentw
Status: accepted → assigned

I checked GlycoVisitorNGlycanInformation visitor in org.grits.toolbox.ms.annotation. If I take a bisected structure from the topology database (GOG73-T) and run it it GRITS it says non bisected. If I convert the GWS sequence to GlycoCT and let the visitor run it it tells me true for bisected. Possible source for the error:

  • Another visitor is used to fill the bi-section column
  • Something goes wrong during the conversion of GWS to GlycoCT
  • Or calculation works fine but the value gets changed later on
Last edited 4 years ago by Rene Ranzinger (previous) (diff)

comment:3 Changed 4 years ago by dbrentw

Resolution: → fixed
Status: assigned → review

Resolved in SVN revision 2121

comment:4 Changed 4 years ago by Rene Ranzinger

Status: review → closed
Note: See TracTickets for help on using tickets.