Opened 3 years ago

Closed 3 years ago

#906 closed task (fixed)

MS Editor: Redesign of editor - MS properties

Reported by: Rene Ranzinger Owned by: sena
Priority: normal Milestone: GRITS - 1.2 SR1
Component: MS data management Version: GRITS 1.1.x
Severity: major Keywords:
Cc: dbrentw, sena

Description (last modified by Rene Ranzinger)

All changes are related to the MS properties tab in the MS entry and MS annotation entry editor.

  • MS experiment type should be editable dropdown in the beginning of the page
  • Description field becomes a multi-line text box
  • Files are represented as a table with two columns
    • File name
    • User defined name (default same as filename)
    • File type (e.g. Full MS, MSn, Peaklist)
    • File format (e.g. Instrument file, mzXML, mzML, Extract file, mgf). Certain file types permit only certain formats. Full MS and MSn will ask for a instrument file and mzXML/mzML. Peaklists can not be instrument files.
  • Have a section above the table that has icons that allow to
    • Add new file
    • Remove file
    • Download file

Internally files should be linked if they are created from each other (mzXML file has a instrument file as parent). Best will be to have the precursor file as dropdown in the file upload dialog which can be pre-selected based on the selection in the table.

One of the data files needs to be selected by default to know which spectras/scans to open.

Change History (7)

comment:1 Changed 3 years ago by Rene Ranzinger

Description: modified (diff)
Owner: set to sena
Status: newassigned

Question is if we still need the metadata (Derivatisation, instrument, collision Type, Adduct, release Type, Glycan type). These information belong into the experiment designer and we do not use them. We could still collect them here but create a protocol in the experiment design instead.

comment:2 Changed 3 years ago by Rene Ranzinger

Description: modified (diff)

comment:3 Changed 3 years ago by Rene Ranzinger

Description: modified (diff)

comment:4 Changed 3 years ago by Rene Ranzinger

Description: modified (diff)

comment:5 Changed 3 years ago by Rene Ranzinger

Description: modified (diff)

comment:6 Changed 3 years ago by sena

Resolution: fixed
Status: assignedreview

implemented in revision [2523]

comment:7 Changed 3 years ago by sena

Status: reviewclosed
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