Timeline



11/07/2014:

23:59 EclipseTutorial_SomeUsefulLinksForPluginDevelopment created by shan
00:39 GritsGlycovaultManager edited by shan
(diff)

11/06/2014:

17:08 Ticket #131 (Export of unannotated peaks to Excel) created by Rene Ranzinger
Current annotation exporter to excel only writes annotated peaks. The …
07:02 Ticket #130 (Nullpointer when running Gelato) created by Rene Ranzinger
Start GELATO annotation with all default settings: * Several …
06:57 Ticket #129 (Export of Merge results) created by Rene Ranzinger
When exporting merge result, Export MS annotation CSV file: * Is …
06:32 Ticket #128 (Export of MS results) created by Rene Ranzinger
When selecting Export MS Annotation CSV file * In file dialog …
06:25 Ticket #127 (Reduce log level for external jars) created by Rene Ranzinger
Reduce the log level to info for all package that are not: * …
06:22 Ticket #91 (Column preferences for annotation aren't persistent if Extract data present) closed by Rene Ranzinger
06:20 Ticket #126 (Checkboxes in Details and Spectra views don't always update) closed by Rene Ranzinger
06:17 Ticket #102 (Problems in Excel export workflow) closed by Rene Ranzinger
06:13 Ticket #12 (Checkbox in details view) closed by Rene Ranzinger
06:11 Ticket #67 (Sample manager - Descriptor Group) closed by Rene Ranzinger
06:05 Ticket #119 (Documentation of data storage for Experiment designer) closed by Rene Ranzinger

11/04/2014:

20:58 Ticket #126 (Checkboxes in Details and Spectra views don't always update) created by dbrentw
Currently, if you open an editor to see the summary, details, and …

11/03/2014:

16:27 ExperimentDesignerDataStorage edited by sena
(diff)

10/31/2014:

23:57 Ticket #122 (GlycovaultManager : Preference) closed by Rene Ranzinger
23:57 Ticket #125 (GlycoVaultManager - flickering) created by Rene Ranzinger
If you click Cancel on the login dialog the manager appears and …
22:41 GritsGlycovaultManager edited by shan
(diff)
18:35 Ticket #96 (New Experiment Design - create from template) closed by Rene Ranzinger
18:34 Ticket #71 (Creating new experiment design) closed by Rene Ranzinger
17:28 Ticket #124 (Glycovault : Adding same multiple SimpleTypes, GroupTypes) created by shan
should be able to add multiple instances of * SimpleTypes in …
16:35 Ticket #123 (Missing Column labels in the Annotation preference page) created by Rene Ranzinger
After opening the MS Glycan Annotation preference page the list of …
16:33 Ticket #91 (Column preferences for annotation aren't persistent if Extract data present) reopened by Rene Ranzinger
Problem re-appeard, if you have extract and separate full MS.

10/30/2014:

23:03 GritsGlycovaultManager edited by shan
(diff)
20:27 Ticket #121 (Adding new Descriptor to Descriptor Group) closed by Rene Ranzinger
20:24 Ticket #57 (Behaviour when deleting ontology) closed by Rene Ranzinger
18:33 ExperimentDesignerDataStorage edited by sena
(diff)
15:17 ExperimentDesignerDataStorage edited by sena
(diff)
15:16 ExperimentDesignerDataStorage created by sena
14:42 GritsDocumentation edited by sena
(diff)

10/29/2014:

22:15 Ticket #122 (GlycovaultManager : Preference) created by shan
Preferences * Glycovault URL * Username
22:14 Ticket #121 (Adding new Descriptor to Descriptor Group) created by shan
* Create new DescriptorGroup -> don't save * Create new Descriptor -> …
22:02 Ticket #120 (GlycovaultManager : Sample Tab) created by shan
Create a tab in Glycovault Manager for Samples * List existing samples …
21:04 Ticket #119 (Documentation of data storage for Experiment designer) created by Rene Ranzinger
Create a Wiki page that documents where certain files are located that …
19:50 Ticket #73 (Drawing of new Protocols) closed by Rene Ranzinger
19:49 Ticket #74 (Placing new protocols) closed by Rene Ranzinger
15:44 TutorialEclipse edited by shan
(diff)
13:55 Ticket #118 (External Quant not visible for non-scan 1 scans in direct infusion for ...) created by dbrentw
Create a MS entry that is from direct infusion. Open MS entry. …
00:12 Ticket #33 (New Preferences for Sample plugin) closed by Rene Ranzinger
00:09 Ticket #38 (Sorting in tables of Descriptors) closed by Rene Ranzinger
00:06 Ticket #117 (Protocol view - Selection) closed by Rene Ranzinger

10/28/2014:

23:01 EclipseTutorial_ControllingColumnRelativeWidth created by shan
22:25 TutorialEclipse edited by shan
(diff)
19:50 Ticket #50 (Missing peaks in annotation spectrum viewer) closed by Rene Ranzinger
19:49 Ticket #51 (Error in summary header image generation) closed by Rene Ranzinger
19:47 Ticket #117 (Protocol view - Selection) created by Rene Ranzinger
Ctrl + A not working on Description of protocol.
19:46 Ticket #100 (Protocol view - Description field) closed by Rene Ranzinger
19:45 Ticket #81 (Palette) closed by Rene Ranzinger
05:11 Ticket #116 (Experiment designer: Report generation) created by Rene Ranzinger
Generate a PDF report of the experiment design: * Design information * …
05:08 Ticket #115 (Experiment designer: Interface for plugins) created by Rene Ranzinger
Implement an interface that allows other plugins to retrieve …
05:04 Ticket #114 (GlycoVault: Submission of experiements) created by Rene Ranzinger
Implement features for the submission of experiments to GlycoVault: * …
04:54 Ticket #113 (GlycoVault: Download to local system) created by Rene Ranzinger
Implement feature to download information from the GlycoVault database …
04:52 Ticket #112 (GlycoVault: Submission from local system) created by Rene Ranzinger
Implement feature to submit local information to the GlycoVault …
04:49 Ticket #111 (Type ahead for parameter values) created by Rene Ranzinger
For parameters with complex namespaces (based on dictionaries or …
04:47 Ticket #110 (Dictionary control for parameter values) created by Rene Ranzinger
Add dictionary control for parameter values: * primitive data types …
04:42 Ticket #109 (Sample editor - remember the template) created by Rene Ranzinger
If the component is created after a template or a template was create …
04:38 Ticket #108 (GlycoVault: Download of samples from GlycoVault into SampleEditor) created by Rene Ranzinger
Allow creating an analyte by downloading a sample from GlycoVault.
04:36 Ticket #107 (GlycoVault: Submission of samples from Sample Editor) created by Rene Ranzinger
Implement a feature allowing for the submission of samples to …
04:30 Ticket #106 (GlycoVault: Download to local and global ontology) created by Rene Ranzinger
Implement features for the download of information from GlycoVault to …
04:28 Ticket #105 (GlycoVault: Submission from local and global ontology) created by Rene Ranzinger
Implement features for the submission information from the local and …
04:25 Ticket #104 (Type ahead for descriptor values) created by Rene Ranzinger
For descriptors with complex namespaces (based on dictionaries or …
04:22 Ticket #103 (Dictionary control for descriptor values) created by Rene Ranzinger
Use the name spaces of the descriptors in the ontology to implement …

10/27/2014:

22:09 Ticket #101 (Protocol view - Field length) closed by Rene Ranzinger
21:52 Ticket #7 (Store and display annotaiton DB settings) closed by Rene Ranzinger
21:51 Ticket #89 (Open entry after MS merge creation) closed by Rene Ranzinger
21:49 Ticket #87 (Open entry after MS creation) closed by Rene Ranzinger
21:48 Ticket #88 (Open entry after MS annotation creation) closed by Rene Ranzinger
17:54 Ticket #102 (Problems in Excel export workflow) created by Rene Ranzinger
Problems may be follow ups of #45. Problems apply mostly to merge and …
17:48 Ticket #45 (Excel export does not warn of overwrite) closed by Rene Ranzinger
17:41 Ticket #49 (Order of descriptors in dropdown) closed by Rene Ranzinger
17:41 Ticket #34 (Component table in Sample editor) closed by Rene Ranzinger

10/24/2014:

23:24 Ticket #14 (New annotation icon) closed by Rene Ranzinger
17:21 Ticket #68 (Sample manager - Flickering for templates) closed by Rene Ranzinger
17:08 Ticket #99 (Error creating experiment design by copying) closed by Rene Ranzinger
17:06 Ticket #82 (Graph issues) closed by Rene Ranzinger
01:12 Ticket #78 (Parameter view) closed by Rene Ranzinger
01:01 Ticket #101 (Protocol view - Field length) created by Rene Ranzinger
* Add field length check * Add the text from the file to Name, …
00:54 Ticket #75 (Protocol view) closed by Rene Ranzinger
00:53 Ticket #100 (Protocol view - Description field) created by Rene Ranzinger
Description field does not allow Return.
00:44 Ticket #84 (Existing design and main menu) closed by Rene Ranzinger
00:41 Ticket #99 (Error creating experiment design by copying) created by Rene Ranzinger
* Create new Analyte * Right click on the analyte New -> …
00:35 Ticket #70 (New experiment design dialog and menu entry) closed by Rene Ranzinger
00:23 PluginSampleEntry edited by shan
(diff)
00:22 step4.png attached to PluginSampleEntry by shan
00:22 step3.png attached to PluginSampleEntry by shan
00:22 step2.png attached to PluginSampleEntry by shan
00:21 step1.png attached to PluginSampleEntry by shan
00:21 step0.png attached to PluginSampleEntry by shan

10/23/2014:

20:36 Ticket #98 (ProtocolView - save as template/variant) created by sena
- When saving a protocol as template or as variant ask for the name - …
18:59 Ticket #97 (ParameterView - add/delete parameters, delete parameter groups) created by sena
Need to implement ability to add and delete individual parameters and …
18:42 Ticket #96 (New Experiment Design - create from template) created by sena
It should be possible to create a new experiment design from a …
00:10 Ticket #64 (Sample manager - Descriptor: Namespace, Category, Unit) closed by Rene Ranzinger

10/22/2014:

23:10 Ticket #69 (Sample manager - Template) closed by Rene Ranzinger
23:06 Ticket #95 (Sample Manager : All sections same size in right side) created by shan
Sections do not have the same size: "General info" = 780 pixel "Member …
22:41 Ticket #83 (Exceptions when closing GRITS with designer open) closed by Rene Ranzinger
01:11 Ticket #86 (Open entry after sample creation) closed by Rene Ranzinger
01:10 Ticket #60 (Missing Trim) closed by Rene Ranzinger

10/21/2014:

22:39 Ticket #48 (Preferences in Merge Report) closed by Rene Ranzinger
22:36 Ticket #91 (Column preferences for annotation aren't persistent if Extract data present) closed by Rene Ranzinger
22:32 Ticket #94 (Dublicated online conversion of mzXML) created by Rene Ranzinger
* Create New MS Experiment * Provide Raw MS/MS file and mzXML MS/MS …
22:06 Ticket #72 (Exceptions in designer) closed by Rene Ranzinger
21:43 Ticket #79 (Parameter view selection problem) closed by Rene Ranzinger
21:42 Ticket #44 (Checkbox for default column settings not working) closed by Rene Ranzinger
21:40 Ticket #66 (Sample manager title) closed by Rene Ranzinger
21:32 Ticket #90 (Group headers for Merge do not match source annotations) closed by Rene Ranzinger
21:25 Ticket #93 (Column chooser dialog cancel problems) created by Rene Ranzinger
Column chooser dialog has no cancel button. If I miss-configured …
21:12 Ticket #63 (Sample manager: General information problems) closed by Rene Ranzinger
21:07 Ticket #56 (Subfolder for ontologies in configuration folder) closed by Rene Ranzinger
18:47 Ticket #92 (Events not triggered in correct order in GELATO wizard) created by dbrentw
If you add Fragments, Fragments per Activation, etc, they sometimes …
17:24 Ticket #91 (Column preferences for annotation aren't persistent if Extract data present) created by dbrentw
After fixing preferences for merge, I discovered a similar bug w/ …
16:23 Ticket #90 (Group headers for Merge do not match source annotations) created by dbrentw
(Internal ticket for bug tracking) I have encountered a few instances …
00:21 Ticket #58 (Error opening category page (admin+user)) closed by Rene Ranzinger
00:10 Ticket #89 (Open entry after MS merge creation) created by Rene Ranzinger
Open the editor after creating a new entry: Entry t_entry = …
00:09 Ticket #88 (Open entry after MS annotation creation) created by Rene Ranzinger
Open the editor after creating a new entry: Entry t_entry = …
00:07 Ticket #87 (Open entry after MS creation) created by Rene Ranzinger
Open the editor after creating a new entry: Entry t_entry = …
00:05 Ticket #86 (Open entry after sample creation) created by Rene Ranzinger
Open the editor after creating a new entry: Entry t_entry = …

10/20/2014:

22:43 Ticket #85 (Create the possibility for hidden entries) closed by Rene Ranzinger
22:42 Ticket #85 (Create the possibility for hidden entries) created by Rene Ranzinger
Hidden entries are needed to handle entries that should not be visible …
21:18 Ticket #62 (Need componentIds assigned to components) closed by Rene Ranzinger
06:21 Ticket #84 (Existing design and main menu) created by Rene Ranzinger
* Select sample with existing design * Main menu File - New - …
06:18 Ticket #83 (Exceptions when closing GRITS with designer open) created by Rene Ranzinger
!ENTRY org.eclipse.ui 4 0 2014-10-20 00:15:33.109 !MESSAGE Unhandled …
06:10 Ticket #82 (Graph issues) created by Rene Ranzinger
* Disallow cyclic graphs * Components can not be the target of an arrow
06:08 Ticket #81 (Palette) created by Rene Ranzinger
* Add a icon to create an entire new protocol * Mouse over category …
06:00 Ticket #80 (Icons for views and editor) created by Rene Ranzinger
Create and use icons for views and editor windows.
05:58 Ticket #79 (Parameter view selection problem) created by Rene Ranzinger
It is possible to edit a parameter value of a line that is not …
05:56 Ticket #78 (Parameter view) created by Rene Ranzinger
* Mouse over shows description tool-tip for parameters. * Function for …
05:50 Ticket #77 (Save protocol template and protocol variant) created by Rene Ranzinger
Allow saving a protocol as template (no values for parameter) or as …
05:47 Ticket #76 (Protocol view paper information) created by Rene Ranzinger
Add the display and adding for publication information to the protocol …
05:45 Ticket #75 (Protocol view) created by Rene Ranzinger
* Creator field is not editable * Trim of text fields when saving …
05:35 Ticket #74 (Placing new protocols) created by Rene Ranzinger
After adding a new protocol to the editor, this protocol should be …
05:33 Ticket #73 (Drawing of new Protocols) created by Rene Ranzinger
Boxes should be made to fit the size of the label but should also have …
05:28 Ticket #72 (Exceptions in designer) created by Rene Ranzinger
Unlogged exceptions written to system out + the error that caused …
04:58 Ticket #16 (Create graphical experiment designer) closed by Rene Ranzinger
04:52 Ticket #71 (Creating new experiment design) created by Rene Ranzinger
In the product: * Starting using the main menu -> after OK in "New …
04:46 Ticket #70 (New experiment design dialog and menu entry) created by Rene Ranzinger
* In the project explorer right click menu disable the View -> …

10/17/2014:

22:50 MenuUpdateManager.png attached to DevelopmentEnvironment by Rene Ranzinger
22:50 MenuMarketplace.png attached to DevelopmentEnvironment by Rene Ranzinger
22:50 DialogUpdateManager.png attached to DevelopmentEnvironment by Rene Ranzinger
22:50 DialogMarketplace.png attached to DevelopmentEnvironment by Rene Ranzinger
22:49 DevelopmentEnvironment edited by Rene Ranzinger
(diff)
22:35 DevelopmentEnvironment created by Rene Ranzinger
22:15 TutorialGrits edited by Rene Ranzinger
(diff)
22:14 TutorialGrits edited by Rene Ranzinger
(diff)
06:07 Ticket #69 (Sample manager - Template) created by Rene Ranzinger
* All sections the same size * "Show all" - checkboxes are not set + …
06:00 Ticket #68 (Sample manager - Flickering for templates) created by Rene Ranzinger
* open Admin mode manager * immediately click on templates => page …
05:59 Ticket #67 (Sample manager - Descriptor Group) created by Rene Ranzinger
* Rename Section "Member Descriptors" to "Descriptors" * Section …
05:28 Ticket #66 (Sample manager title) created by Rene Ranzinger
Add white space in title between "-Admin"
05:22 Ticket #65 (Sample manager - Unit of Measurement) created by Rene Ranzinger
Use unit ontology to select from but migrate the term in our ontology …
05:20 Ticket #64 (Sample manager - Descriptor: Namespace, Category, Unit) created by Rene Ranzinger
Categories * Remove "Category" directly after each checkbox * Order …
05:13 Ticket #63 (Sample manager: General information problems) created by Rene Ranzinger
Label (all tabs) * no length checks for Label * Extreme long label …
00:42 PluginSampleEntry created by shan
00:30 PluginOverview edited by shan
(diff)

10/16/2014:

18:45 Ticket #62 (Need componentIds assigned to components) created by sena
Component has a componentId field but they are not assigned, always …

10/15/2014:

21:23 Ticket #61 (Add old presentations and posters to main webpage) closed by Rene Ranzinger
17:46 Ticket #61 (Add old presentations and posters to main webpage) created by Rene Ranzinger
Add the old presentations and posters (Beilstein symposium, Dalian …
17:45 Tickets #52,​54 batch updated by Rene Ranzinger
05:24 Ticket #60 (Missing Trim) created by Rene Ranzinger
Add trim for all text fields and text boxes.
03:34 Ticket #59 (Icons in sample manager) created by Rene Ranzinger
* Increase size of refresh icon in header to fit bar size * Swap A-Z …
03:29 Ticket #58 (Error opening category page (admin+user)) created by Rene Ranzinger
An error has occurred. See error log for more details. …
03:23 Ticket #57 (Behaviour when deleting ontology) created by Rene Ranzinger
Problem 1: * Open manager (admin) * Delete Standard ontology from …
03:14 Ticket #56 (Subfolder for ontologies in configuration folder) created by Rene Ranzinger
Create a separate sub folder "org.grits.toolbox.entry.sample"in the …
00:32 Ticket #55 (Add downloads to web page and log number of downloads) closed by Rene Ranzinger
00:08 Ticket #55 (Add downloads to web page and log number of downloads) created by Rene Ranzinger
Add downloads to web page and log number of downloads

10/14/2014:

23:18 Ticket #54 (google Analytics for developer webpage) created by Rene Ranzinger
Create a own google analytics view for the trac pages and added the …
00:42 GritsGlycovaultManager edited by shan
(diff)
00:00 GritsGlycovaultManager created by shan

10/13/2014:

23:59 GritsDocumentation edited by shan
(diff)
23:12 Ticket #53 (News section for GRITS main webpage) created by Rene Ranzinger
Use the Blog module on the GRITS main web page and create a news section.
23:11 TicketComponents edited by Rene Ranzinger
(diff)
23:06 Ticket #52 (google Analytics for main webpage) created by Rene Ranzinger
Add google analytics logging to the main web page …
23:01 Ticket #51 (Error in summary header image generation) created by Rene Ranzinger
In the WorkspaceKhalifeh - workspace open annotation 14b * Open scan 1 …
22:58 Ticket #50 (Missing peaks in annotation spectrum viewer) created by Rene Ranzinger
In the WorkspaceKhalifeh - workspace open annotation 14b * Open scan 1 …

10/10/2014:

16:33 GritsTutorial_ExperimentDesigner edited by sena
(diff)
16:33 experimentdesigner.2.jpg attached to GritsTutorial_ExperimentDesigner by sena
experimentdesignmodel
16:32 experimentdesigner.jpg attached to GritsTutorial_ExperimentDesigner by sena
01:33 ListDialogExample edited by sena
(diff)
01:30 listdialog.png attached to ListDialogExample by sena
01:25 ListDialogExample created by sena
00:18 TutorialEclipse edited by sena
(diff)

10/09/2014:

15:27 PluginOverview edited by dbrentw
(diff)

10/08/2014:

17:30 PluginOverview edited by dbrentw
(diff)
17:26 PluginOverview edited by dbrentw
(diff)
17:21 Ticket #37 (Missing scrollbar afteer tab change in SampleEditor) closed by Rene Ranzinger
17:14 PluginOverview edited by dbrentw
(diff)
00:55 MultiPageEditorWithActionOnToolBar edited by shan
(diff)
Note: See TracTimeline for information about the timeline view.