Timeline



02/06/2015:

23:09 Ticket #222 (Sample Editor: Disallow invalid values for Type-ahead) created by Rene Ranzinger
In the new/edit descriptor dialog is it possible to type a incorrect …
23:01 Ticket #221 (Sample Editor: Store namespace and IDs for descriptors) created by Rene Ranzinger
In the sample XML file for each descriptor the ID, selected namespace …
22:51 Ticket #220 (Exception while opening sample editor) created by sena
I see NullPointerException in the log file whenever I open the sample …
22:43 Ticket #218 (Experiment designer: Delete file error) closed by Rene Ranzinger
22:41 Ticket #41 (Change namespace of dosage) closed by Rene Ranzinger
22:38 Ticket #195 (Sample Editor: Tooltip on rows) closed by Rene Ranzinger
22:09 DevelopmentNotes_ExperimentDesigner edited by sena
(diff)
19:41 Ticket #210 (Experiment designer: Delete selected items) closed by Rene Ranzinger
19:40 Ticket #219 (Experiment designer: Set template when creating new template) created by Rene Ranzinger
Problem: * Create new protocol in editor from template x * Remove/add …
19:33 Ticket #207 (Experiment designer: Protocol URI) closed by Rene Ranzinger
19:29 GritsTutorial_PDFGeneration edited by sena
(diff)

02/05/2015:

18:43 GritsTutorial_AddingNewNamespaceForDescriptorValue edited by shan
(diff)
17:40 ExperimentDesignerProtocolVariants created by sena
17:26 GritsDocumentation edited by sena
(diff)
01:02 Ticket #218 (Experiment designer: Delete file error) created by Rene Ranzinger
* Create new sample * Create new design with several protocols => …
00:21 TutorialGrits edited by shan
(diff)
00:21 GritsTutorial_AddingNewNamespaceForDescriptorValue created by shan

02/04/2015:

23:44 Ticket #205 (Experiment desiger: Adding data containing steps) closed by Rene Ranzinger
23:39 Ticket #217 (Experiment designer: Box size) closed by Rene Ranzinger
23:38 Ticket #212 (Experiment designer: Description when creating templates) closed by Rene Ranzinger
19:13 TutorialGrits edited by shan
(diff)
19:12 GritsTutorial_UpdateNamespaces edited by shan
(diff)
19:08 CellTypeDownload.png attached to GritsTutorial_UpdateNamespaces by shan
19:08 GritsTutorial_UpdateNamespaces created by shan
18:46 GritsTutorial_NamespaceHandlingForTypeahead created by shan
16:51 TutorialGrits edited by shan
(diff)
13:09 GritsTutorial_MSMethodCreatoin edited by dbrentw
(diff)
13:05 GritsTutorial_MSMethodCreatoin edited by dbrentw
(diff)
00:22 GritsTutorial_MSMethodCreatoin edited by dbrentw
(diff)
00:15 GritsTutorial_MSMethodCreatoin edited by dbrentw
(diff)

02/03/2015:

23:24 Ticket #145 (Sample editor : Find matching Template for a Component) closed by Rene Ranzinger
22:53 Ticket #213 (Sample Editor: Remove download feature) closed by Rene Ranzinger
22:52 Ticket #197 (Sample manager - Namespace) closed by Rene Ranzinger
22:41 Ticket #209 (Experiment designer: Dublicated protocol templates) closed by Rene Ranzinger
22:22 Ticket #217 (Experiment designer: Box size) created by Rene Ranzinger
* Select a protocol from the Palette * Click in the drawing area and …
22:16 Ticket #208 (Experiment designer: Editable units) closed by Rene Ranzinger
22:14 Ticket #206 (Experiment designer: Web URL) closed by Rene Ranzinger
19:19 Ticket #216 (MS Editor: MSProfile data 2) created by Rene Ranzinger
After converting the mzXML file from ticket #215 to mzML and back to …
02:14 Ticket #215 (MS Editor: MSProfile data) created by Rene Ranzinger
Trying to open the Maldi data from Roberto …
01:53 Ticket #214 (MS Editor: Fusion data) created by Rene Ranzinger
Trying to run Lindas data on GRITS I got two problems besides the …

02/01/2015:

23:12 Ticket #213 (Sample Editor: Remove download feature) created by Rene Ranzinger
Remove the download button and code from the plugin.
23:07 Ticket #212 (Experiment designer: Description when creating templates) created by Rene Ranzinger
When creating a new template of a protocol with Description field …
23:03 Ticket #211 (Experiment designer: Predeployment of variants) created by Rene Ranzinger
It should be possible to store a list of variants as part of the …
22:57 Ticket #210 (Experiment designer: Delete selected items) created by Rene Ranzinger
If the "delete" button on the keyboard is pressed and the editor is …
22:51 Ticket #209 (Experiment designer: Dublicated protocol templates) created by Rene Ranzinger
Create a new protocol and give it the name "Tyrpsin digestion". This …
22:46 Ticket #208 (Experiment designer: Editable units) created by Rene Ranzinger
* Choose a parameter with unit of measurement * Click in the cell …
21:35 Ticket #207 (Experiment designer: Protocol URI) created by Rene Ranzinger
Each protocol has two URIs 1. URI of the template used to instantiate …
21:31 Ticket #206 (Experiment designer: Web URL) created by Rene Ranzinger
Add a member variable for a URL in the data-model of protocal and in …

01/31/2015:

03:25 Ticket #205 (Experiment desiger: Adding data containing steps) created by Rene Ranzinger
If an step with data (MS) is added after the experimental design is …
03:21 Ticket #191 (Report generation: Overwrite) closed by Rene Ranzinger
03:20 Ticket #116 (Experiment designer: Report generation) closed by Rene Ranzinger
03:10 Ticket #136 (Out of Memory when dealing with LC/MS runs) closed by Rene Ranzinger
03:10 Ticket #154 (Khoo data set) closed by Rene Ranzinger
03:09 Ticket #147 (LC-MS/MS support in GELATO) closed by Rene Ranzinger
03:08 Ticket #204 (LC-MS data: Unable to open MS2) created by Rene Ranzinger
Double clicking on MS2 precursor in MS shows error message about not …
02:59 Ticket #203 (LC-MS data: unannotated spectra) created by Rene Ranzinger
* Open an MS1 that has unannotated precursors * Change to MS Scans tab …
02:54 Ticket #202 (LC-MS data: Num of Annotated peaks incorrect) created by Rene Ranzinger
In annotation editor (MS Scans tab) the column "Num Annotated Peaks" …
02:46 Ticket #201 (LC-MS data: Missing MS1 scans) created by Rene Ranzinger
In annotation editor (MS Scans) several MS1 that do not have subscans …
00:37 Ticket #200 (GELATO: Intensity Cut-off should be a double) created by Rene Ranzinger
Change intensity cut off in the dialog and the data model from integer …
00:28 Ticket #199 (MS Editor: Progress bar for creating new MS entries) created by Rene Ranzinger
Add a progress bar when creating new MS entries, since copying large …

01/30/2015:

21:53 Milestone Plugin - GlycoVault 1.0 completed
A plugin for the interaction with the GlycoVault database: * Creation …
21:52 Ticket #176 (GlycovaultManager : Download SourceSample) closed by Rene Ranzinger
21:48 Tickets #170,​174,​105,​106,​112,​113,​120,​171,​172,​175,​177,​178,​107,​108,​114 batch updated by Rene Ranzinger
18:31 Ticket #198 (Sample manager - Procedure for new Namespace) created by shan
* Document the procedure in wiki * Add files names to ontology by …
18:16 Ticket #197 (Sample manager - Namespace) created by shan
Namespace for Genes and Treatment should be changed to string
18:13 Ticket #196 (Sample editor : Add Descriptor) created by shan
When adding a descriptor implement : * Implement Dialog as a …
00:46 Ticket #103 (Dictionary control for descriptor values) closed by Rene Ranzinger
00:44 Ticket #195 (Sample Editor: Tooltip on rows) created by Rene Ranzinger
- Remove the "-" after the descriptor name - Add a paragraph with the …
00:39 Ticket #104 (Type ahead for descriptor values) closed by Rene Ranzinger
00:29 Ticket #194 (MS data: Scan hierarchy view) created by Rene Ranzinger
Add a view in the left side area (Project Explorer View) when opening …
00:26 Ticket #193 (MS Editor: Precursor column) created by Rene Ranzinger
In the "MS Scans" tab of the MS editor add a column precursor m/z. …
00:23 Ticket #192 (MS Editor: Inconsistency when presenting different MS types) created by Rene Ranzinger
Open direct infusion in MS Editor shows the following tabs: - List of …
00:11 Ticket #180 (Opening TIM experiments) closed by Rene Ranzinger

01/29/2015:

23:51 Ticket #173 (Incorrect object returned from glycovault client's getProtocolList() method) closed by Rene Ranzinger
21:26 Ticket #191 (Report generation: Overwrite) created by Rene Ranzinger
If a PDF report is generated and an existing file name is chosen a …
20:41 Ticket #80 (Icons for views and editor) closed by Rene Ranzinger
20:40 Ticket #167 (Paper view - invalid PMID) closed by Rene Ranzinger
20:28 GritsTutorial_MSMethodCreatoin edited by dbrentw
(diff)
20:27 GritsTutorial_MSMethodCreatoin edited by dbrentw
(diff)
17:03 GritsTutorial_MSMethodCreatoin created by dbrentw
17:02 TutorialGrits edited by dbrentw
(diff)
01:34 Ticket #190 (Distinguish isomeric structures) created by Rene Ranzinger
Implement strategies to distinguish isomeric structures or find …
01:30 Ticket #189 (JMass: Deconvolution and deisotopic) created by Rene Ranzinger
Use the JMass code and the matched simulated data to deconvolute and …
01:04 Ticket #188 (JMass: Simulation of MS1 data) created by Rene Ranzinger
Integrate JMass to simulate MS1 data: - Calculate an alignment score …
00:55 Ticket #187 (SAGE integration) created by Rene Ranzinger
Integrate of SAGE (https://code.google.com/p/sage-and-gelato/) into …
00:51 Ticket #186 (MS data: user guidelines) created by Rene Ranzinger
Creation of user guidelines similar to the experiment designer …
00:48 Ticket #185 (Glycan centric representation of data) created by Rene Ranzinger
MS annotation table and merge table are both peak centric. An …
00:45 Ticket #184 (Scrolling problem) created by Rene Ranzinger
In MS tables the vertical scroll bar does not really show the length …

01/28/2015:

23:09 Ticket #183 (Sample PDF Report) created by Rene Ranzinger
Add a module to the Experiment designer PDF report generation to add …
21:34 Ticket #182 (MS Quantification) created by Rene Ranzinger
- Quantification against internal standard - Intensity as ration (%) …
21:31 Ticket #181 (Add key numbers columns to merge) created by Rene Ranzinger
Key number columns (glycan type, number of branches, number of gal-gal …
20:44 GritsTutorial_PDFGeneration edited by sena
(diff)
20:30 GritsTutorial_PDFGeneration created by sena
19:43 TutorialGrits edited by sena
(diff)

01/25/2015:

03:42 Ticket #180 (Opening TIM experiments) created by Rene Ranzinger
* An artificial Scan 0 is created => double click * Problem 1 - List …
02:06 Ticket #179 (MS annotation does not open) created by Rene Ranzinger
After GELATO annotation the entry is no longer opened automatically.

01/23/2015:

23:47 Ticket #178 (GlycovaultManager : Submission) created by shan
Handling Duplicates The simplest duplicate case that fails is …
23:03 Ticket #177 (GlycovaultManager : Downloading SourceSample) created by shan
The downloaded SourceSample is not properly filled. The …
23:00 Ticket #176 (GlycovaultManager : Download SourceSample) created by shan
The downloaded SourceSample is not properly filled. The …

01/21/2015:

16:39 Ticket #175 (Need methods in GlycoVault client to upload and download a Protocol) created by sena
In order to be able to upload an Experiment Design, we need the …
16:37 Ticket #174 (Need methods in GlycoVault client to upload and download a parameter) created by sena
The following methods are required to be able to upload Protocol …
16:33 Ticket #173 (Incorrect object returned from glycovault client's getProtocolList() method) created by sena
Facade.java in glycovault client has a method with the following …
16:30 Ticket #172 (Error downloading ProtocolDesign right after uploading it) created by sena
I have uploaded the following Protocol Design using the client and try …
16:26 Ticket #171 (Error downloading Protocol Design) created by sena
When I try to download a protocol design with a name that contains a …
16:23 Ticket #170 (Downloaded Experiment Design does not have the correct Experiment Steps.) created by sena
There are two experiment designs in the glycovault database and for …

01/20/2015:

16:38 Ticket #111 (Type ahead for parameter values) closed by Rene Ranzinger
01:44 Ticket #166 (Save protocol template: Category ignored) closed by Rene Ranzinger

01/15/2015:

23:05 Ticket #169 (ProjectExplorerDialog does not filter out hidden entries) created by sena
Project Explorer View does not show hidden children but the …

01/07/2015:

20:09 NamespaceContentAssist edited by sena
(diff)
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