Timeline
03/03/2015:
- 23:32 Ticket #277 (Error with too high intensity cutoff) closed by
- 22:54 Ticket #269 (MS converter: Incorrect file) closed by
- 22:52 Ticket #276 (Verify that a Full MS file contains an MS1 scan) closed by
- 22:48 Ticket #278 (MS Converter: Database connection limit) created by
- Properly close all DB connections on the web service side otherwise to …
- 22:25 Ticket #266 (Error creating peak list view) closed by
- 22:20 Ticket #265 (Missing scan data) closed by
- 22:19 Ticket #277 (Error with too high intensity cutoff) created by
- I set the intensity cutoff to 100.1% (that should not be possible). As …
- 22:17 Ticket #276 (Verify that a Full MS file contains an MS1 scan) created by
- If the user mistakenly specifies a full MS file but it doesn't contain …
- 21:06 Ticket #275 (MS Editor: Uploading separate Full Ms for data without MS1) closed by
- 21:04 Ticket #270 (External quant not working for MS Profile and TIM) closed by
- 20:56 Ticket #118 (External Quant not visible for non-scan 1 scans in direct infusion for ...) closed by
- 18:17 Ticket #275 (MS Editor: Uploading separate Full Ms for data without MS1) created by
- When uploading a separate full MS for data without MS1 data (TIM or …
- 17:35 Ticket #274 (iCRM project description for Trac) created by
- Write a project description that can be added to the …
- 17:24 Ticket #273 (MS Quantification using Isotopic labeled tags) created by
- For example TMT Tags (see Sergei Snovida and Yehia Mechref)
- 17:22 Ticket #272 (Sample Editor: Version of the ontology) created by
- Use the version number of the ontology with a x.y.z number * x = Major …
- 17:03 Ticket #271 (Sample Editor: Validation of descriptor input not working in deployment) created by
- Selecting a Boolean descriptor * OK button is enabled but does not …
- 16:44 Ticket #270 (External quant not working for MS Profile and TIM) created by
- External quant was not tested for MS Profile and TIM and bugs were found.
- 00:12 Ticket #269 (MS converter: Incorrect file) created by
- If a incorrect file is submitted instead of a RAW file to the …
03/02/2015:
02/27/2015:
- 17:26 Ticket #268 (Error handling in AnnotationWriter class) created by
- The AnnotationWriter class of the om jar needs improvement. There are …
- 17:23 Ticket #267 (Invalid linkage format) created by
- It is a rare occurrence, but occasionally an error "invalid format for …
- 16:58 Ticket #193 (MS Editor: Precursor column) closed by
- 16:33 Ticket #266 (Error creating peak list view) created by
- After addressing the issue in ticket 193, the peak list tab won't open …
- 16:26 Ticket #265 (Missing scan data) created by
- If a scan has an empty peak list, these won't show up in the …
02/26/2015:
02/25/2015:
- 20:15 Ticket #264 (MS converter: Error when canceling) created by
- If the cancel button is pressed in the converter dialog: * Exceptions …
- 20:11 Ticket #252 (MS converter: Overwriting files) closed by
- 20:00 Ticket #263 (Processmanager) created by
- Create a generic process manager that can be used to run time …
- 19:57 Ticket #262 (MS Editor: Redesign of file handling) created by
- Creation Wizard * Move the MS type on the first page * Remove second …
- 19:51 Ticket #261 (Prevent multiuse of workspace) created by
- A workspace should be opened only by one GRITS instance at a time.
- 19:50 Ticket #248 (Scale bar for Cartoon preference does not have enough options) closed by
- 18:53 Ticket #260 (Unable to handle Direct Infusion if no MS1 scan present) closed by
- 18:53 Ticket #192 (MS Editor: Inconsistency when presenting different MS types) closed by
- 18:26 Ticket #260 (Unable to handle Direct Infusion if no MS1 scan present) created by
- If the user creates a direct infusion MS file but does not generate a …
- 17:54 Ticket #259 (Configuraiton location) closed by
- 17:53 Ticket #259 (Configuraiton location) created by
- Change config file location to prevent the loose of files when …
- 16:36 Ticket #258 (Experiment designer: Configuration in jar) created by
- * Keep the global ontology in the jar rather than copying it to the …
- 00:29 Milestone Plugin - Sample Manager 1.0 completed
- First version of the sample manager plugin which replaces the old …
- 00:29 Ticket #256 (Sample Editor: Editing String descriptors) closed by
- 00:25 Ticket #257 (Migrate to Eclipse Luna (4.4)) created by
- Migrate to the newest Eclipse version.
- 00:17 Ticket #157 (Sample management: Icon problems) closed by
02/24/2015:
- 23:56 Ticket #221 (Sample Editor: Store namespace and IDs for descriptors) closed by
- 23:47 Ticket #256 (Sample Editor: Editing String descriptors) created by
- When editing string descriptors (double click) a dialog opens with the …
- 23:35 Ticket #235 (MS Editor: Web service invocation problem) closed by
- 23:31 Ticket #240 (Create New Sample: Wizard) closed by
- 23:16 Ticket #233 (GELATO: Cancel) closed by
- 23:11 Ticket #255 (Support mzML) created by
- In addition to mzXML we should also mzML files. Probably best to …
- 23:06 Ticket #251 (Displaying data in Spectra tab correctly) closed by
- 23:01 Ticket #254 (Optimizing opening MS annotation) created by
- When opening (double click) a annotated MS1 scan the first operation …
- 22:53 Ticket #244 (Better icons for experiment designer) closed by
- 18:42 Ticket #253 (MS Editor: Missing MS1 scans for direct infusion) closed by
- 18:31 Ticket #253 (MS Editor: Missing MS1 scans for direct infusion) created by
- If a direct infusion experiment is recorded without MS1 the upload …
- 18:07 Ticket #252 (MS converter: Overwriting files) created by
- If file name for Full MS and MS data is the same e.g.: * Data folder …
- 17:56 Ticket #251 (Displaying data in Spectra tab correctly) created by
- The Spectra chart has the ability to display data in either profile or …
- 16:23 Ticket #65 (Sample manager - Unit of Measurement) closed by
02/23/2015:
- 23:37 Ticket #246 (Error saving annotations for LC-MS) closed by
- 23:34 Ticket #247 (Checkboxes not working for Summary View for MS Profile data) closed by
- 23:32 Ticket #250 (Error trying to use Filter open for MS Annotation of LC-MS data) closed by
- 23:24 Ticket #15 (New icon and splash screen) closed by
- 21:44 Ticket #250 (Error trying to use Filter open for MS Annotation of LC-MS data) created by
- If you open an LC-MS annotation and attempt to use the "Filter" tool …
- 17:08 Ticket #162 (Experiment desiger: User guide) closed by
02/21/2015:
02/20/2015:
- 23:59 Ticket #249 (Sample Editor - manager: Display issues on Mac) created by
- When opening the manager (admin/user) on Mac: * there is a big space …
- 21:31 Ticket #248 (Scale bar for Cartoon preference does not have enough options) created by
- The scale of the cartoon preference only allows for a few size …
- 21:26 Ticket #247 (Checkboxes not working for Summary View for MS Profile data) created by
- If you open the Summary view for MS Profile annotation, you can click …
- 21:23 Ticket #246 (Error saving annotations for LC-MS) created by
- If you edit the selected annotations for LC-MS and try to save, an …
- 01:06 Ticket #234 (Annotation Editor: Direct infusion Num Annotation peaks) closed by
- 01:03 Ticket #231 (LC/MS annotation entry) closed by
- 01:01 Ticket #245 (Annotation Editor: Hide/show peaks in Summary) created by
- Tested with Khoo data 5% cutoff and BY ions. * Open Scan 5 or 8 in …
- 00:45 Ticket #204 (LC-MS data: Unable to open MS2) closed by
02/19/2015:
- 16:31 Ticket #244 (Better icons for experiment designer) created by
- Need better icons for experiment template "save as" and protocol …
- 00:03 Ticket #222 (Sample Editor: Disallow invalid values for Type-ahead) closed by
02/18/2015:
- 23:44 Ticket #36 (Better edit icon in sample editor) closed by
- 22:58 Ticket #203 (LC-MS data: unannotated spectra) closed by
- 22:53 Ticket #202 (LC-MS data: Num of Annotated peaks incorrect) closed by
- 22:46 Ticket #243 (Batch annotation of several MS runs) created by
- Allow to select several MS entries and to annotate them with the same …
- 22:43 Ticket #242 (Batch creation of sample, experiment design and MS entries) created by
- Allow to create a batch of samples, experiment designs and MS entries …
- 22:36 Ticket #241 (Rename of entries) created by
- Create a right click (project explorer) and edit menu based option to …
- 22:29 Ticket #240 (Create New Sample: Wizard) created by
- Change the sample/analyte creation dialog to a wizard. * first page: …
- 17:22 GritsTutorial_ExperimentDesignerInterface edited by
- (diff)
- 17:14 GritsTutorial_ExperimentDesignerInterface edited by
- (diff)
- 17:12 GritsTutorial_ExperimentDesignerInterface created by
- 16:58 TutorialGrits edited by
- (diff)
02/17/2015:
- 20:25 Ticket #239 (Worspace Chooser - no Shortcuts) created by
- Discovered one "issue?" with the GRITS Toolbox "Select Workspace" > …
- 03:36 Ticket #220 (Exception while opening sample editor) closed by
02/16/2015:
- 23:01 Ticket #238 (Determine how to model glycan structures in the graph) created by
- Need to determine whether gylcans can be rendered in the graph …
- 22:58 Ticket #237 (Determine the technology to be used to implement the Glycan pathway module) created by
- Investigate the capabilities provided by ZEST to see if it is more …
- 22:13 Ticket #227 (Sample Editor: NamespaceHandler for NCBI) closed by
- 22:00 Ticket #229 (Creating new Analyte: First component name) closed by
- 22:00 Ticket #59 (Icons in sample manager) closed by
02/13/2015:
- 23:54 Grits_IconsDocumentation edited by
- (diff)
- 23:21 Grits_IconsDocumentation edited by
- (diff)
- 23:15 Grits_IconsDocumentation created by
- 18:52 GritsDocumentation edited by
- (diff)
- 18:52 TutorialGrits edited by
- (diff)
02/12/2015:
- 23:24 Ticket #214 (MS Editor: Fusion data) closed by
- 23:23 Ticket #236 (GRITS not reacting when viewing MS and annotation data) created by
- When opening large data sets (e.g. Lindas Fusion data or Khoo data) …
- 23:10 Ticket #235 (MS Editor: Web service invocation problem) created by
- There errors may have been introduced by changes with ticket #152. * …
- 20:43 Ticket #152 (Max upload size for mzXML web service) closed by
- 20:40 Ticket #215 (MS Editor: MSProfile data) closed by
- 20:38 Ticket #234 (Annotation Editor: Direct infusion Num Annotation peaks) created by
- For direct infusion annotation runs the Num Annotation Peaks column is …
- 20:28 Ticket #232 (GELATO: Temp folder managment) closed by
- 20:19 Ticket #233 (GELATO: Cancel) created by
- When canceling an annotation run (after glycan DB initialization): - …
- 18:08 Ticket #232 (GELATO: Temp folder managment) created by
- Problem 1: GELATO creates a new folder for each annotation run but it …
- 17:54 Ticket #231 (LC/MS annotation entry) created by
- When deleting an LC/MS annotation the zip archive in the ms folder is …
- 17:37 Ticket #230 (support iCRM) created by
- 00:30 Ticket #226 (Annotation Editor: Open MS profile data) closed by
- 00:05 Ticket #201 (LC-MS data: Missing MS1 scans) closed by
02/11/2015:
- 23:55 Milestone Plugin - Experiment Designer 1.0 completed
- First version of the experiment designer plugin. This plugin will …
- 23:54 Ticket #211 (Experiment designer: Predeployment of variants) closed by
- 23:47 Ticket #223 (Experiment designer: Deployment) closed by
- 00:59 Ticket #229 (Creating new Analyte: First component name) created by
- The name of the first component, which is auto created with the …
- 00:55 Ticket #196 (Sample editor : Add Descriptor) closed by
- 00:44 Ticket #95 (Sample Manager : All sections same size in right side) closed by
- 00:43 Ticket #198 (Sample manager - Procedure for new Namespace) closed by
- 00:37 Ticket #183 (Sample PDF Report) closed by
- 00:11 Ticket #224 (Intensity filter not working for MS1 scans) closed by
- 00:10 Ticket #225 (GELATO: Right click for Annotation entry) closed by
02/09/2015:
- 22:07 Ticket #228 (Need 2 intensity cutoffs for MS Annotation (MS1 and MSn)) created by
- It turns out that the intensity percentage filter was only applied to …
- 18:39 Ticket #227 (Sample Editor: NamespaceHandler for NCBI) created by
- The generic NamespaceHandler crashes for for the species namespace …
- 00:33 Ticket #179 (MS annotation does not open) closed by
- 00:30 Ticket #226 (Annotation Editor: Open MS profile data) created by
- After opening MS profile annotation data the "Structure Annotation" …
- 00:25 Ticket #225 (GELATO: Right click for Annotation entry) created by
- * In the Project explorer right click on an annotation entry * Select …
- 00:20 Ticket #216 (MS Editor: MSProfile data 2) closed by
- 00:18 Ticket #200 (GELATO: Intensity Cut-off should be a double) closed by
- 00:17 Ticket #155 (Double values for Intensity cutoff in GELATO) closed by
- 00:16 Ticket #148 (MS profile support in GELATO) closed by
02/07/2015:
- 16:45 Ticket #224 (Intensity filter not working for MS1 scans) created by
- When applying the intensity cutoff filter for MS annotation, it …
- 00:25 Ticket #223 (Experiment designer: Deployment) created by
- After making a new deployment and trying to create a new design a …
- 00:06 Ticket #219 (Experiment designer: Set template when creating new template) closed by
02/06/2015:
- 23:09 Ticket #222 (Sample Editor: Disallow invalid values for Type-ahead) created by
- In the new/edit descriptor dialog is it possible to type a incorrect …
- 23:01 Ticket #221 (Sample Editor: Store namespace and IDs for descriptors) created by
- In the sample XML file for each descriptor the ID, selected namespace …
- 22:51 Ticket #220 (Exception while opening sample editor) created by
- I see NullPointerException in the log file whenever I open the sample …
- 22:43 Ticket #218 (Experiment designer: Delete file error) closed by
- 22:41 Ticket #41 (Change namespace of dosage) closed by
- 22:38 Ticket #195 (Sample Editor: Tooltip on rows) closed by
- 22:09 DevelopmentNotes_ExperimentDesigner edited by
- (diff)
- 19:41 Ticket #210 (Experiment designer: Delete selected items) closed by
- 19:40 Ticket #219 (Experiment designer: Set template when creating new template) created by
- Problem: * Create new protocol in editor from template x * Remove/add …
- 19:33 Ticket #207 (Experiment designer: Protocol URI) closed by
- 19:29 GritsTutorial_PDFGeneration edited by
- (diff)
02/05/2015:
- 18:43 GritsTutorial_AddingNewNamespaceForDescriptorValue edited by
- (diff)
- 17:40 ExperimentDesignerProtocolVariants created by
- 17:26 GritsDocumentation edited by
- (diff)
- 01:02 Ticket #218 (Experiment designer: Delete file error) created by
- * Create new sample * Create new design with several protocols => …
- 00:21 TutorialGrits edited by
- (diff)
- 00:21 GritsTutorial_AddingNewNamespaceForDescriptorValue created by
02/04/2015:
- 23:44 Ticket #205 (Experiment desiger: Adding data containing steps) closed by
- 23:39 Ticket #217 (Experiment designer: Box size) closed by
- 23:38 Ticket #212 (Experiment designer: Description when creating templates) closed by
- 19:13 TutorialGrits edited by
- (diff)
- 19:12 GritsTutorial_UpdateNamespaces edited by
- (diff)
- 19:08 GritsTutorial_UpdateNamespaces created by
- 18:46 GritsTutorial_NamespaceHandlingForTypeahead created by
- 16:51 TutorialGrits edited by
- (diff)
- 13:09 GritsTutorial_MSMethodCreatoin edited by
- (diff)
- 13:05 GritsTutorial_MSMethodCreatoin edited by
- (diff)
- 00:22 GritsTutorial_MSMethodCreatoin edited by
- (diff)
- 00:15 GritsTutorial_MSMethodCreatoin edited by
- (diff)
02/03/2015:
- 23:24 Ticket #145 (Sample editor : Find matching Template for a Component) closed by
- 22:53 Ticket #213 (Sample Editor: Remove download feature) closed by
- 22:52 Ticket #197 (Sample manager - Namespace) closed by
- 22:41 Ticket #209 (Experiment designer: Dublicated protocol templates) closed by
- 22:22 Ticket #217 (Experiment designer: Box size) created by
- * Select a protocol from the Palette * Click in the drawing area and …
- 22:16 Ticket #208 (Experiment designer: Editable units) closed by
- 22:14 Ticket #206 (Experiment designer: Web URL) closed by
- 19:19 Ticket #216 (MS Editor: MSProfile data 2) created by
- After converting the mzXML file from ticket #215 to mzML and back to …
- 02:14 Ticket #215 (MS Editor: MSProfile data) created by
- Trying to open the Maldi data from Roberto …
- 01:53 Ticket #214 (MS Editor: Fusion data) created by
- Trying to run Lindas data on GRITS I got two problems besides the …
02/01/2015:
- 23:12 Ticket #213 (Sample Editor: Remove download feature) created by
- Remove the download button and code from the plugin.
- 23:07 Ticket #212 (Experiment designer: Description when creating templates) created by
- When creating a new template of a protocol with Description field …
- 23:03 Ticket #211 (Experiment designer: Predeployment of variants) created by
- It should be possible to store a list of variants as part of the …
- 22:57 Ticket #210 (Experiment designer: Delete selected items) created by
- If the "delete" button on the keyboard is pressed and the editor is …
- 22:51 Ticket #209 (Experiment designer: Dublicated protocol templates) created by
- Create a new protocol and give it the name "Tyrpsin digestion". This …
- 22:46 Ticket #208 (Experiment designer: Editable units) created by
- * Choose a parameter with unit of measurement * Click in the cell …
- 21:35 Ticket #207 (Experiment designer: Protocol URI) created by
- Each protocol has two URIs 1. URI of the template used to instantiate …
- 21:31 Ticket #206 (Experiment designer: Web URL) created by
- Add a member variable for a URL in the data-model of protocal and in …
Note: See TracTimeline
for information about the timeline view.
