Timeline



03/24/2015:

18:52 Ticket #300 (Tracking of changes in the project) created by Rene Ranzinger
18:51 Ticket #299 (Integration for mobile devices) created by Rene Ranzinger
18:50 Ticket #298 (Cartoon preferences) created by Rene Ranzinger
Add an option for the orientation of the cartoon. This option is …

03/23/2015:

22:47 Ticket #297 (GlycanExtraInfo: New types for O-Glycans and GlycoLipids) created by Rene Ranzinger
Fill the glycan type field for non-N-Glycans
22:46 Ticket #296 (Extend glycan extra information generation) created by Rene Ranzinger
* Delete util package from ms.om * Remove visitors.jar from the ms.om …
21:11 Ticket #295 (Missing GlydeII sequence in GlycanAnnotation) created by Rene Ranzinger
Fill the sequence field in Annotation (parent class of …
21:09 Ticket #294 (Filter annotation with wrong Editor active) created by Rene Ranzinger
* Double click to open an annotation. * Do not open a MS1 annotation, …

03/18/2015:

22:21 Ticket #291 (Adding Namespace to a Descriptor in Sample Manager) closed by Rene Ranzinger
22:15 Ticket #282 (Migrate sample entry code) closed by Rene Ranzinger
22:13 Ticket #280 (Create a separate plugin for the sample manager) closed by Rene Ranzinger
22:11 Ticket #267 (Invalid linkage format) closed by Rene Ranzinger
22:07 Ticket #289 (Glycan Structure database: GWS format) closed by Rene Ranzinger
22:02 Ticket #238 (Determine how to model glycan structures in the graph) closed by Rene Ranzinger

03/17/2015:

19:30 Ticket #293 (Allow the user to specify the exact glycans to search for) created by dbrentw
Currently, the user defines the database of structures and the …
19:27 Ticket #292 (Overhaul of GELATO) created by dbrentw
In the implementation in 1.0, GELATO did not process all setting …

03/16/2015:

23:42 TutorialEclipse edited by shan
(diff)
23:41 AddingPreferenceHierarchy created by shan

03/12/2015:

16:31 Ticket #291 (Adding Namespace to a Descriptor in Sample Manager) created by shan
When Sample Manager is opened in User Mode * After creating a new …

03/11/2015:

23:27 Ticket #290 (Glycan Structure database: Topology databases) created by Rene Ranzinger
Create for each standard database a topology version of the database …
23:26 Ticket #289 (Glycan Structure database: GWS format) created by Rene Ranzinger
Change the format in the glycan structure databases so that GWS format …

03/09/2015:

23:25 Ticket #288 (Migration to org.grits.toolbox.entry.ms.annotation.glycan.merge) created by Rene Ranzinger
Migrate the old …
23:20 Ticket #287 (Migration to org.grits.toolbox.entry.ms.annotation.glycan) created by Rene Ranzinger
Migrate the old "edu.uga.ccrc.simiantools.entry.ms.annotation.glycan " …
23:19 Ticket #286 (Mirgration to org.grits.toolbox.entry.ms.annotation) created by Rene Ranzinger
Migrate the old "edu.uga.ccrc.simiantools.entry.ms.annotation" main …
23:17 Ticket #285 (Migration org.grits.toolbox.entry.ms) created by Rene Ranzinger
Migrate the old "edu.uga.ccrc.simiantools.entry.ms" main project to …
23:15 Ticket #284 (Migration org.grits.toolbox.view.projectexplorer) created by Rene Ranzinger
Migrate the old …
22:13 Ticket #283 (Migration org.grits.toolbox.core) created by Rene Ranzinger
Migrate the old "edu.uga.ccrc.simiantools" main project to …
22:11 Ticket #282 (Migrate sample entry code) created by Rene Ranzinger
Migrate the edu.uga.ccrc.simiantools.entry.sample to …
21:51 Ticket #281 (Creating and displaying MS Experiment throws exceptions on Mac) created by sena
- Right click on a Sample - Create MS Experiment It works and opens …

03/06/2015:

20:46 Ticket #280 (Create a separate plugin for the sample manager) created by Rene Ranzinger
Create new plugin org.grits.toolbox.editor.samplemanager and move the …
20:26 Ticket #279 (Extention of the Project entry) created by Rene Ranzinger
Collaborative project with the CCRC Service Lab and Tiemeyer Lab. …

03/04/2015:

19:56 Milestone GRITS - 1.0 completed
First major milestone and first main version of GRITS toolbox. this …
19:56 Ticket #272 (Sample Editor: Version of the ontology) closed by Rene Ranzinger
19:55 Ticket #271 (Sample Editor: Validation of descriptor input not working in deployment) closed by Rene Ranzinger
18:09 Ticket #258 (Experiment designer: Configuration in jar) closed by Rene Ranzinger

03/03/2015:

23:32 Ticket #277 (Error with too high intensity cutoff) closed by Rene Ranzinger
22:54 Ticket #269 (MS converter: Incorrect file) closed by Rene Ranzinger
22:52 Ticket #276 (Verify that a Full MS file contains an MS1 scan) closed by Rene Ranzinger
22:48 Ticket #278 (MS Converter: Database connection limit) created by Rene Ranzinger
Properly close all DB connections on the web service side otherwise to …
22:25 Ticket #266 (Error creating peak list view) closed by Rene Ranzinger
22:20 Ticket #265 (Missing scan data) closed by Rene Ranzinger
22:19 Ticket #277 (Error with too high intensity cutoff) created by Rene Ranzinger
I set the intensity cutoff to 100.1% (that should not be possible). As …
22:17 Ticket #276 (Verify that a Full MS file contains an MS1 scan) created by dbrentw
If the user mistakenly specifies a full MS file but it doesn't contain …
21:06 Ticket #275 (MS Editor: Uploading separate Full Ms for data without MS1) closed by Rene Ranzinger
21:04 Ticket #270 (External quant not working for MS Profile and TIM) closed by Rene Ranzinger
20:56 Ticket #118 (External Quant not visible for non-scan 1 scans in direct infusion for ...) closed by Rene Ranzinger
18:17 Ticket #275 (MS Editor: Uploading separate Full Ms for data without MS1) created by Rene Ranzinger
When uploading a separate full MS for data without MS1 data (TIM or …
17:35 Ticket #274 (iCRM project description for Trac) created by Rene Ranzinger
Write a project description that can be added to the …
17:24 Ticket #273 (MS Quantification using Isotopic labeled tags) created by Rene Ranzinger
For example TMT Tags (see Sergei Snovida and Yehia Mechref)
17:22 Ticket #272 (Sample Editor: Version of the ontology) created by Rene Ranzinger
Use the version number of the ontology with a x.y.z number * x = Major …
17:03 Ticket #271 (Sample Editor: Validation of descriptor input not working in deployment) created by Rene Ranzinger
Selecting a Boolean descriptor * OK button is enabled but does not …
16:44 Ticket #270 (External quant not working for MS Profile and TIM) created by dbrentw
External quant was not tested for MS Profile and TIM and bugs were found.
00:12 Ticket #269 (MS converter: Incorrect file) created by Rene Ranzinger
If a incorrect file is submitted instead of a RAW file to the …

03/02/2015:

16:52 Ticket #268 (Error handling in AnnotationWriter class) closed by Rene Ranzinger

02/27/2015:

17:26 Ticket #268 (Error handling in AnnotationWriter class) created by dbrentw
The AnnotationWriter class of the om jar needs improvement. There are …
17:23 Ticket #267 (Invalid linkage format) created by dbrentw
It is a rare occurrence, but occasionally an error "invalid format for …
16:58 Ticket #193 (MS Editor: Precursor column) closed by Rene Ranzinger
16:33 Ticket #266 (Error creating peak list view) created by dbrentw
After addressing the issue in ticket 193, the peak list tab won't open …
16:26 Ticket #265 (Missing scan data) created by dbrentw
If a scan has an empty peak list, these won't show up in the …

02/26/2015:

20:55 GritsChangeLog created by Rene Ranzinger
20:31 Ticket #264 (MS converter: Error when canceling) closed by Rene Ranzinger

02/25/2015:

20:15 Ticket #264 (MS converter: Error when canceling) created by Rene Ranzinger
If the cancel button is pressed in the converter dialog: * Exceptions …
20:11 Ticket #252 (MS converter: Overwriting files) closed by Rene Ranzinger
20:00 Ticket #263 (Processmanager) created by Rene Ranzinger
Create a generic process manager that can be used to run time …
19:57 Ticket #262 (MS Editor: Redesign of file handling) created by Rene Ranzinger
Creation Wizard * Move the MS type on the first page * Remove second …
19:51 Ticket #261 (Prevent multiuse of workspace) created by Rene Ranzinger
A workspace should be opened only by one GRITS instance at a time.
19:50 Ticket #248 (Scale bar for Cartoon preference does not have enough options) closed by Rene Ranzinger
18:53 Ticket #260 (Unable to handle Direct Infusion if no MS1 scan present) closed by Rene Ranzinger
18:53 Ticket #192 (MS Editor: Inconsistency when presenting different MS types) closed by Rene Ranzinger
18:26 Ticket #260 (Unable to handle Direct Infusion if no MS1 scan present) created by dbrentw
If the user creates a direct infusion MS file but does not generate a …
17:54 Ticket #259 (Configuraiton location) closed by Rene Ranzinger
17:53 Ticket #259 (Configuraiton location) created by Rene Ranzinger
Change config file location to prevent the loose of files when …
16:36 Ticket #258 (Experiment designer: Configuration in jar) created by Rene Ranzinger
* Keep the global ontology in the jar rather than copying it to the …
00:29 Milestone Plugin - Sample Manager 1.0 completed
First version of the sample manager plugin which replaces the old …
00:29 Ticket #256 (Sample Editor: Editing String descriptors) closed by Rene Ranzinger
00:25 Ticket #257 (Migrate to Eclipse Luna (4.4)) created by Rene Ranzinger
Migrate to the newest Eclipse version.
00:17 Ticket #157 (Sample management: Icon problems) closed by Rene Ranzinger

02/24/2015:

23:56 Ticket #221 (Sample Editor: Store namespace and IDs for descriptors) closed by Rene Ranzinger
23:47 Ticket #256 (Sample Editor: Editing String descriptors) created by Rene Ranzinger
When editing string descriptors (double click) a dialog opens with the …
23:35 Ticket #235 (MS Editor: Web service invocation problem) closed by Rene Ranzinger
23:31 Ticket #240 (Create New Sample: Wizard) closed by Rene Ranzinger
23:16 Ticket #233 (GELATO: Cancel) closed by Rene Ranzinger
23:11 Ticket #255 (Support mzML) created by Rene Ranzinger
In addition to mzXML we should also mzML files. Probably best to …
23:06 Ticket #251 (Displaying data in Spectra tab correctly) closed by Rene Ranzinger
23:01 Ticket #254 (Optimizing opening MS annotation) created by Rene Ranzinger
When opening (double click) a annotated MS1 scan the first operation …
22:53 Ticket #244 (Better icons for experiment designer) closed by Rene Ranzinger
18:42 Ticket #253 (MS Editor: Missing MS1 scans for direct infusion) closed by Rene Ranzinger
18:31 Ticket #253 (MS Editor: Missing MS1 scans for direct infusion) created by Rene Ranzinger
If a direct infusion experiment is recorded without MS1 the upload …
18:07 Ticket #252 (MS converter: Overwriting files) created by Rene Ranzinger
If file name for Full MS and MS data is the same e.g.: * Data folder …
17:56 Ticket #251 (Displaying data in Spectra tab correctly) created by dbrentw
The Spectra chart has the ability to display data in either profile or …
16:23 Ticket #65 (Sample manager - Unit of Measurement) closed by Rene Ranzinger

02/23/2015:

23:37 Ticket #246 (Error saving annotations for LC-MS) closed by Rene Ranzinger
23:34 Ticket #247 (Checkboxes not working for Summary View for MS Profile data) closed by Rene Ranzinger
23:32 Ticket #250 (Error trying to use Filter open for MS Annotation of LC-MS data) closed by Rene Ranzinger
23:24 Ticket #15 (New icon and splash screen) closed by Rene Ranzinger
21:44 Ticket #250 (Error trying to use Filter open for MS Annotation of LC-MS data) created by dbrentw
If you open an LC-MS annotation and attempt to use the "Filter" tool …
17:08 Ticket #162 (Experiment desiger: User guide) closed by Rene Ranzinger
Note: See TracTimeline for information about the timeline view.