Timeline



03/28/2016:

22:54 Ticket #607 (Thermo app) created by Rene Ranzinger
Was of integrating the GRITS functionality with Thermo cloud services: …
22:51 Ticket #606 (Byonic integration of the curated databases) created by Rene Ranzinger
Try to integrate the human curated databases with Byonic to allow …
22:41 Ticket #605 (Species specific databases) created by Rene Ranzinger
We should work on and provide species specific databases on our …
22:40 Ticket #604 (GELATO Node for Proteome Discoverer) created by Rene Ranzinger
As collaboration with Thermo we should think about a GELATO node for …
22:21 Ticket #603 (MS progress bars: stuck on MAC) created by Rene Ranzinger
The following behavior is described for GELATO but seem to be true for …
22:17 Ticket #602 (License for source code) created by Rene Ranzinger
We need to decide on a license for source code if we want to prove the …
22:16 Ticket #601 (Webbased UI) created by Rene Ranzinger
A recommendation from the advisory board meeting 2016 was to change …
22:15 Ticket #600 (Server based backend) created by Rene Ranzinger
Implement an alternative backend system that is based on a server. The …
22:01 Ticket #544 (GELATO: Preferences for Gelato settings) closed by Rene Ranzinger

03/23/2016:

19:43 Ticket #599 (Error when opening project on different systems) created by dbrentw
If you create a project in Windows and then attempt to open it on Mac, …
15:00 TreeViewerNatTable edited by sena
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03/22/2016:

22:21 TreeViewerNatTable edited by sena
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22:19 TreeViewerNatTable edited by sena
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22:03 TutorialGrits edited by shan
(diff)
22:02 E4_Migration_Tutorial_Links created by shan
21:59 TutorialGrits edited by shan
(diff)
21:57 TreeViewerNatTable created by sena
21:57 E4_Migration_Tutorial edited by shan
(diff)
21:52 Migrate_View_To_Part created by shan
21:45 TutorialEclipse edited by sena
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21:21 E4_Migration_Tutorial edited by shan
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03/21/2016:

22:25 Ticket #598 (Glycan side specific display) created by Rene Ranzinger
Have a display allowing to present side specific glycan data.
22:23 Ticket #597 (MS convert problems) created by Rene Ranzinger
Mindy reported problems using her local MS convert.
19:41 Ticket #596 (Annotation Editor: Opening MS3 with with precursor annotation (MAC)) created by Rene Ranzinger
Related to the simone workspace on the USB: * Open scan 27 annotation …
19:39 Ticket #595 (MS Merge: Opening old merge entries (MAC)) created by Rene Ranzinger
Related to the simone workspace on the USB: * The report "2" was …
19:36 Ticket #594 (Service lab: Query options) created by Rene Ranzinger
There are certain standard queries and search criteria that need to be …
19:35 Ticket #593 (Project management: Add a number to tasks) created by Rene Ranzinger
Add another columns for number of executions for a task. e.g. …
17:14 Ticket #592 (Service lab plugin) created by Rene Ranzinger
Create a plugin specific to service lab. This plugin will be mainly …
17:11 Ticket #591 (Generic cartoon preferences) created by Rene Ranzinger
The cartoon preferences should be moved to a non MS plugin so that …

03/19/2016:

20:52 Ticket #590 (Sample manager: Progressbar for loading dictionaries) created by Rene Ranzinger
On slow computers the loading of species dictionary can take several …
20:49 Ticket #589 (Sample manager: Species dictionary (32bit)) created by Rene Ranzinger
When opening the 32bit Windows version. * go directly to sample …
20:46 Ticket #588 (Sample manager: Dropbown for boolean descriptors) created by Rene Ranzinger
For descriptors such as biological a dropdown with prefilled values …

03/17/2016:

22:52 Ticket #587 (MS Merge: Preference init) closed by Rene Ranzinger
20:10 Milestone GRITS - 1.1 completed
Second version of GRITS which will include * General Bug fixes of 1.0 …
20:10 Ticket #585 (Annotation Editor: Opening MS3 with no precursor annotation) closed by Rene Ranzinger
19:56 Ticket #562 (No preferences for Merge) closed by Rene Ranzinger
19:56 Ticket #587 (MS Merge: Preference init) created by Rene Ranzinger
There is a inconsistency how merge preferences are initialized: Case …

03/16/2016:

21:35 Ticket #579 (MS editor: Suboptimales behavior when uploading wrong files) closed by Rene Ranzinger
21:02 Ticket #583 (Annotation Editor: Column chooser for candidate table does not show) closed by Rene Ranzinger
20:50 Ticket #580 (MS editor: Default selection for peak list file) closed by Rene Ranzinger
16:22 Ticket #574 (MS editor: Changes to file upload) closed by Rene Ranzinger
16:12 Ticket #586 (MS Merge: Structure specific columns) created by Rene Ranzinger
Are the structure specific columns (#GalNAc etc.) needed for the merge …
16:10 Ticket #3 (New label for charge columns) closed by Rene Ranzinger
01:44 Ticket #577 (Annotation Editor: Column preferences not applied) closed by Rene Ranzinger

03/15/2016:

22:44 Ticket #573 (Annotation Editor: MS2 starts with summary page) closed by Rene Ranzinger
22:44 Ticket #585 (Annotation Editor: Opening MS3 with no precursor annotation) created by Rene Ranzinger
Related to the "Simone.rar" workspace in Dropbox. * Open Asthma 2 …
22:34 Ticket #578 (Annotation Editor: 2 Compositions columns) closed by Rene Ranzinger
22:24 Ticket #584 (MS Merge: Opening of old reports) created by Rene Ranzinger
Related to the "Simone.rar" workspace in dropbox. * Open the "Human …
22:16 Ticket #576 (charges not correct in Merge) closed by Rene Ranzinger
22:14 Ticket #583 (Annotation Editor: Column chooser for candidate table does not show) created by Rene Ranzinger
* Open MS1 annotation * Right click on the upper table header -> …
22:04 Ticket #571 (MS editor: Error without Full MS) closed by Rene Ranzinger
21:55 Ticket #582 (MS editor: Exceptions opening old MS entries) created by Rene Ranzinger
Related to "Simone.rar" workspace in dropbox. * Open workspace * Open …
21:52 Ticket #581 (MS editor: Unable to delete entries with incorrect files) created by Rene Ranzinger
This is related to #579. * Create an entry with an invalid file or …
21:43 Ticket #580 (MS editor: Default selection for peak list file) created by Rene Ranzinger
By default the Dropdown for the peaklist format is emtpy. It still …
21:40 Ticket #579 (MS editor: Suboptimales behavior when uploading wrong files) created by Rene Ranzinger
Primary problem: When creating a new MS entry upload an incorrect file …

03/10/2016:

19:24 Ticket #578 (Annotation Editor: 2 Compositions columns) created by Rene Ranzinger
In the annotation table (MS1) there are two composition columns one of …
19:18 Ticket #577 (Annotation Editor: Column preferences not applied) created by Rene Ranzinger
* Open MS annotation MS1 * Column chooser - move all columns into the …
17:30 Ticket #576 (charges not correct in Merge) created by dbrentw
Feature charge is always null. Precursor charge and calculated charge …

03/09/2016:

17:30 Ticket #575 (Implement a heatmap component) created by Rene Ranzinger
Implement the heatmap GUI element as a component that can be placed in …

03/07/2016:

19:07 Ticket #574 (MS editor: Changes to file upload) created by Rene Ranzinger
First page: * Make the XML file mandatory * Make the raw file optional …
19:05 Ticket #573 (Annotation Editor: MS2 starts with summary page) created by Rene Ranzinger
When clicking of MS1 annotations to look at the MS2 spectra the …
15:25 Ticket #572 (Need to list Full, Extract or special peaks files in MS Properties) created by dbrentw
Currently, the MS Properties tab only contains the meta-data. We need …
05:03 Ticket #523 (Workspace O-Glycan Merge: 3. Delete Merge) closed by Rene Ranzinger
04:51 Ticket #520 (Workspace O-Glycan Merge: 1. deletion of MS folder) closed by Rene Ranzinger

03/04/2016:

17:53 Ticket #571 (MS editor: Error without Full MS) created by Rene Ranzinger
* Create new MS * Select RAW and mzXML on first page * nothing on …
06:15 Ticket #563 (No preferences for Spectra Viewer) closed by Rene Ranzinger
06:14 Ticket #570 (MS annotation spetrum viewer: unannotated preference not persisted) created by Rene Ranzinger
* Open MS glycan preference * MS Level 2 * Deselect all but …
06:10 Ticket #569 (MS preferences: Buttons not working) created by Rene Ranzinger
"Respore defaults" and "Apply" buttons are not working in all MS …
06:07 Ticket #568 (MS annotation spetrum viewer: show label for unannotated) created by Rene Ranzinger
The show label option for unannotated peaks does not have any effect. …
06:05 Ticket #567 (MS annotation spetrum viewer: size of option area) created by Rene Ranzinger
Size of the option area needs to be increase since the "Unannotated …
06:01 Ticket #566 (MS Spetrum viewer) created by Rene Ranzinger
The spectrum viewer for MS entry should not have annotated peaks …
05:59 Ticket #561 (No preferences for new Mass Spec Experiment) closed by Rene Ranzinger
05:55 Ticket #565 (Mass Spec Preference: Own subtree) created by Rene Ranzinger
All mass spec preferences should be grouped below an own subtree …
05:49 Ticket #564 (Mass Spec Preference: Dialog size to big) created by Rene Ranzinger
When switching to the Mass Spec Experiment preference the dialog size …

03/03/2016:

21:25 Ticket #563 (No preferences for Spectra Viewer) created by dbrentw
21:25 Ticket #562 (No preferences for Merge) created by dbrentw
21:25 Ticket #561 (No preferences for new Mass Spec Experiment) created by dbrentw
20:44 Ticket #541 (Simple Quick start) closed by Rene Ranzinger
20:40 Ticket #290 (Glycan Structure database: Topology databases) closed by Rene Ranzinger

03/01/2016:

23:19 Ticket #560 (GELATO: A/X for topology structures) created by Rene Ranzinger
Currently GELATO is generating A/X annotations for structures from the …
22:21 Ticket #281 (Creating and displaying MS Experiment throws exceptions on Mac) closed by Rene Ranzinger
22:20 Ticket #559 (Workspace chooser: New workspace + Return) created by Rene Ranzinger
Problem 1 * Manually edit the folder name to create a new workspace * …
22:17 Ticket #558 (Workspace chooser: Dropdown on MAC) created by Rene Ranzinger
On MAC (Sena) the field for the folder name is not a textfield with …
22:00 Ticket #557 (Project import: MS entries after project name changes) created by Rene Ranzinger
* Export a project with MS entries + annotation entries * Import the …
21:48 Ticket #556 (Project import: Choose none default name) created by Rene Ranzinger
* Import a project * Select one project from the file * Click on the …
21:44 Ticket #519 (Import and Export of projects: release files) closed by Rene Ranzinger
21:42 Ticket #555 (Project export: Improvements to progress bar) created by Rene Ranzinger
* If large files are copied the progress bar dialog gets the "Not …
21:35 Ticket #554 (Perspectives: Interesting effects) created by Rene Ranzinger
* Open the editor for a project, sample, design and archive Problem …
21:29 Ticket #513 (Document Archive: Scrollbar missing) closed by Rene Ranzinger
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