Timeline



08/10/2016:

21:14 Milestone GRITS - 1.1 SR1 completed
First GRITS 1.1 service release includes: * Migration of Core and …

08/09/2016:

18:55 Ticket #706 (Java 1.8) closed by Rene Ranzinger

08/08/2016:

22:20 Ticket #589 (Sample manager: Species dictionary (32bit)) closed by Rene Ranzinger
21:38 Ticket #725 (Sample manager: Duplicate names for templates) created by Rene Ranzinger
* Create a new template with the Label "New Template" (caps N and T) * …
21:34 Ticket #724 (Sample manager: Exceptions creating new template) created by Rene Ranzinger
Tested with the Demo workspace from the GRITS webpage: * Open …
21:13 Ticket #696 (Annotation Editor: Controls not working for MS profile) closed by Rene Ranzinger
20:01 Ticket #719 (Unannotated peak label setting not persistent) closed by Rene Ranzinger
19:59 Ticket #708 (Annotation Editor: Unable to open MS3 annotations) closed by Rene Ranzinger
19:57 Ticket #723 (Annotation Editor: Size of columns in summary view) created by Rene Ranzinger
When opening the summary view it happens that the GlycanID is cutoff …
19:46 Ticket #655 (Project Explorer: Not possible to double click several entries) closed by Rene Ranzinger
19:45 Ticket #697 (MS Merge: Empty merge report for MS profile data) closed by Rene Ranzinger
19:44 Ticket #722 (Annotation Editor: exception when MS annotations become top) created by Rene Ranzinger
* Open an MS annotation entry * Open a Merge entry (now two editors …

08/05/2016:

22:39 Ticket #623 (Annotation Editor: Label for unannotated peaks) closed by Rene Ranzinger
22:38 Ticket #721 (Annotation Editor: Spectrum viewer settings lost whens scrolling) created by Rene Ranzinger
* Open MS2 spectra with multiple annotation * Open spectrum viewer * …
22:32 Ticket #720 (Annotation Editor: Spectrum viewer biggest peak does not get annotation) created by Rene Ranzinger
If the biggest peak is annotated or any peak is zoomed to take 80% of …
22:28 Ticket #719 (Unannotated peak label setting not persistent) created by dbrentw
If you set the "Show Labels" option on or off, the value is not …
16:44 Ticket #718 (GlycanArray - probe set filter produces wrong number of results) created by sena
Using the 'Probe Set' filter produces the following results: 'Set 32' …
16:39 Ticket #717 (GlycanArray - named lists (in filters) are not sorted) created by sena
Named lists e.g. 'Backbone Type', 'Probe Name', and 'Lipid Name' are …
16:33 Ticket #716 (GlycanArray - filters/sorters do not handle "empty" (unrecognized) ...) created by sena
'#Antenna' does not recognize 16 structures but these appear in …
16:29 Ticket #715 (GlycanArray - add #of items in the list) created by sena
Indicate the number of items in the list on the "Master Table" …

08/04/2016:

23:23 Ticket #660 (MS editor: Correct missing mzXML index) closed by Rene Ranzinger
23:17 Ticket #714 (GELATO: Database index) closed by Rene Ranzinger
23:14 Ticket #714 (GELATO: Database index) created by Rene Ranzinger
Add a database index that allows to load metadata from the GELATO …
19:28 Ticket #612 (Annotation Editor: Displaying Ms profile spectra) closed by Rene Ranzinger

08/03/2016:

23:04 Ticket #626 (GlycanArray - copyTo does not work when sample has a glycan array ...) closed by Rene Ranzinger
23:03 Ticket #638 (GlycanArray - append sample name to the name of the experiment) closed by Rene Ranzinger
23:03 Ticket #713 (Glycan Array: Selecting wrong file type in wizard) created by Rene Ranzinger
In the wizard page the user is ask to upload the data file for the …
22:58 Ticket #712 (Glycan Array: scrollbar not accessible in master table) created by Rene Ranzinger
When opening the master table the area is cut-off but the filter …
22:49 Ticket #635 (GlycanArray - extract additional information from the instrument files) closed by Rene Ranzinger
22:48 Ticket #627 (GlycanArray - remove N/A from concentration type in the wizard) closed by Rene Ranzinger
22:46 Ticket #672 (Glycan Array - S (Sulphate) sorter does not work) closed by Rene Ranzinger
22:44 Ticket #711 (Glycan Array: Image generation failed) created by Rene Ranzinger
Sometimes the image generation seem to fail: HS-S4-AO*, HS-S8-AO*. …
22:40 Ticket #671 (Glycan Array - filter presentation) closed by Rene Ranzinger
22:39 Ticket #653 (Glycan array: new filters) closed by Rene Ranzinger
22:33 Ticket #651 (Glycan array: Linkage filter) closed by Rene Ranzinger
22:33 Ticket #652 (Glycan array: Feature filter) closed by Rene Ranzinger
21:30 Ticket #476 (qrtPCR plugin: uploaded files should be copied to workspace) closed by Rene Ranzinger
21:26 Ticket #616 (qrtPCR master gene list manager: copying into the sublist does not ...) closed by Rene Ranzinger
21:26 Ticket #618 (qrtPCR gene list management: selection/deselection problems) closed by Rene Ranzinger
21:25 Ticket #619 (qrtPCR master gene list manager: deselect button does not work properly) closed by Rene Ranzinger
21:22 Ticket #710 (qrtPCR master gene list manager - filtering) created by Rene Ranzinger
* open the Mouse gene list * Filter/Search for "GT2" + return * Scroll …
21:14 Ticket #709 (qRT-PCR: Gene master list manager - opening of list) created by Rene Ranzinger
Double click on a list row will only work on the cells File Name
21:02 Ticket #629 (ExperimentDesigner - parameter values are not edited correctly in the ...) closed by Rene Ranzinger
20:50 Ticket #443 (Glycan Tree: Filters) closed by Rene Ranzinger
19:31 Ticket #702 (Annotation Editor: Missing scans in LC/MS) closed by Rene Ranzinger
19:30 Ticket #708 (Annotation Editor: Unable to open MS3 annotations) created by Rene Ranzinger
* Annotate the osman LC/MS run with standard settings + 1% cutoff and …
19:13 Ticket #707 (GELATO: Cancel does not do a cleanup) created by Rene Ranzinger
When you cancel a GELATO annotation (tested in init database mode) it …

08/01/2016:

19:31 Ticket #706 (Java 1.8) created by Rene Ranzinger
It seems that there are some problems with Java 1.7 and certain …

07/28/2016:

21:57 Ticket #699 (MS editor: Error loading mzXML snippets) closed by Rene Ranzinger
20:07 Ticket #699 (MS editor: Error loading mzXML snippets) reopened by Rene Ranzinger
It seems that still causes problems with the GELATO annotation. See …
20:00 Ticket #700 (GELATO: No annotation for glycopeptide data) closed by Rene Ranzinger
17:37 Ticket #705 (Annotation Editor: Candidate selection refresh in MS2) created by Rene Ranzinger
* open a MS2 summary with multiple annotations * click in the tickbox …
17:35 Ticket #704 (Annotation Editor: Candidate selection transfer to MS2) created by Rene Ranzinger
* open a new annotation (nothing deselected) * pick a peak and …

07/26/2016:

23:08 Ticket #703 (Grits version number in log) created by Rene Ranzinger
If possible add the version of GRITS in the log file: * either in the …
23:00 Ticket #702 (Annotation Editor: Missing scans in LC/MS) created by Rene Ranzinger
When opening LC data (double click on an MS1) only rows are shown that …
22:37 Ticket #701 (Project creation: project not automatically opened) created by Rene Ranzinger
Open a workspace with Project and Sample entry. * Select the sample …
22:29 Ticket #665 (Annotation Editor: Missing unannotated peaks in MS profile) closed by Rene Ranzinger
22:20 Ticket #663 (Annotation Editor: IndexOutOfBound when opening MS profile data) closed by Rene Ranzinger
22:19 Ticket #662 (MS editor: Error loading mzML) closed by Rene Ranzinger
22:17 Ticket #699 (MS editor: Error loading mzXML snippets) closed by Rene Ranzinger
21:24 Ticket #700 (GELATO: No annotation for glycopeptide data) created by Rene Ranzinger
Attached is an mzXML file with a MS1 scan and one MS2 scan …
20:21 Ticket #699 (MS editor: Error loading mzXML snippets) created by Rene Ranzinger
To make a big LC/MS run easier to handle it is possible to split it in …

07/22/2016:

20:51 Ticket #662 (MS editor: Error loading mzML) reopened by Rene Ranzinger

07/21/2016:

23:27 Ticket #698 (GC-MS integration) created by Rene Ranzinger
Service lab has a excel template for the calculation of …
03:06 ConfiguringIDE edited by Rene Ranzinger
(diff)

07/20/2016:

23:24 ConfiguringIDE edited by Rene Ranzinger
(diff)
23:23 ConfiguringIDE edited by Rene Ranzinger
(diff)
23:15 ConfiguringIDE edited by Rene Ranzinger
(diff)
23:10 formatter.zip attached to ConfiguringIDE by Rene Ranzinger
23:09 configuration_formatter.png attached to ConfiguringIDE by Rene Ranzinger
23:09 ConfiguringIDE edited by Rene Ranzinger
(diff)
22:46 workingset6.png attached to ConfiguringIDE by Rene Ranzinger
22:45 workingset5.png attached to ConfiguringIDE by Rene Ranzinger
22:45 workingset4.png attached to ConfiguringIDE by Rene Ranzinger
22:45 workingset3.png attached to ConfiguringIDE by Rene Ranzinger
22:45 workingset2.png attached to ConfiguringIDE by Rene Ranzinger
22:45 workingset1.png attached to ConfiguringIDE by Rene Ranzinger
22:45 ConfiguringIDE edited by Rene Ranzinger
(diff)
22:07 Ticket #697 (MS Merge: Empty merge report for MS profile data) created by Rene Ranzinger
When generating a merge report for MS profile annotations the report …
22:06 Ticket #696 (Annotation Editor: Controls not working for MS profile) created by Rene Ranzinger
If an MS profile is annotated the spectrum viewer does not allow to …
19:57 compare_package_menu.png attached to ConfiguringIDE by Rene Ranzinger
19:57 compare_package.png attached to ConfiguringIDE by Rene Ranzinger
19:57 ConfiguringIDE edited by Rene Ranzinger
(diff)
19:41 breadcrumb.png attached to ConfiguringIDE by Rene Ranzinger
19:41 ConfiguringIDE edited by Rene Ranzinger
(diff)
17:29 Ticket #675 (Project export: Export of multiple selected projects) closed by Rene Ranzinger
17:28 Ticket #557 (Project import: MS entries after project name changes) closed by Rene Ranzinger

07/19/2016:

18:32 ConfiguringIDE edited by Rene Ranzinger
(diff)
18:31 ConfiguringIDE edited by Rene Ranzinger
(diff)
18:24 configuration_stype.png attached to ConfiguringIDE by Rene Ranzinger
18:20 configuration_content.png attached to ConfiguringIDE by Rene Ranzinger
18:20 ConfiguringIDE edited by Rene Ranzinger
(diff)
17:40 configuration_filter.png attached to ConfiguringIDE by Rene Ranzinger
17:40 ConfiguringIDE edited by Rene Ranzinger
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17:29 configuration_save.png attached to ConfiguringIDE by Rene Ranzinger
17:29 ConfiguringIDE edited by Rene Ranzinger
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07/18/2016:

23:08 configuration_javaeditor.png attached to ConfiguringIDE by Rene Ranzinger
23:07 ConfiguringIDE edited by Rene Ranzinger
(diff)
22:59 configuration_typing.png attached to ConfiguringIDE by Rene Ranzinger
22:56 ConfiguringIDE edited by Rene Ranzinger
(diff)
22:50 configuration_texteditor.png attached to ConfiguringIDE by Rene Ranzinger
22:50 ConfiguringIDE edited by Rene Ranzinger
(diff)
21:31 configuration_link.png attached to ConfiguringIDE by Rene Ranzinger
21:31 ConfiguringIDE created by Rene Ranzinger
21:12 TutorialGrits edited by Rene Ranzinger
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07/14/2016:

22:40 Ticket #695 (GELATO: Neutral Loss renaming and configuration changes) created by Rene Ranzinger
Rename the neutral loss page to "neutral loss/gain". And have a hint …
05:28 Ticket #694 (GELATO: Add adduct changes) created by Rene Ranzinger
In the Add/edit adduct dialog rename "pre-defined adduct" to adduct. …

07/13/2016:

20:26 Ticket #693 (GELATO: Disabling of Add buttons) created by Rene Ranzinger
In the Fragments Per MS level dialog is a problem with the enabling of …
20:25 Ticket #692 (GELATO: Page 3 changes) created by Rene Ranzinger
Fragment settings page of GELATO: * Rename Glyco Cleavages to …
17:04 Ticket #691 (GELATO: rename "Trust charge in mzXML") created by Rene Ranzinger
Remove mzXML and use MS XML file (as in the MS upload dialog)

07/12/2016:

22:12 Ticket #690 (Service lab: Statistic generation) created by Rene Ranzinger
Create statistics for Carol based on her examples. Statistics are …
22:11 Ticket #689 (Service lab: Bill) created by Rene Ranzinger
Upload of the final bill * File is stored in the project archive * …
22:09 Ticket #688 (Service lab: Data extraction) created by Rene Ranzinger
Update parameter with information from uploaded files * Have separate …
22:07 Ticket #687 (Service lab: Report) created by Rene Ranzinger
Generation of a Service lab report * Use the text templates associated …
22:06 Ticket #686 (Service lab: Notification email) created by Rene Ranzinger
* Management module that allows to associate people (preference) with …
22:06 Ticket #685 (Service lab: Validation of completeness) created by Rene Ranzinger
* Management module * Allow associating a Task (preference) with a …
22:04 Ticket #684 (Service lab: Bill proposal) created by Rene Ranzinger
Generate a bill proposal based on what analysts have uploaded * …
22:02 Service lab plugin.pptx attached to Milestone Module - Service lab plugin by Rene Ranzinger
05:22 Ticket #654 (Project Explorer: Closed project does not open with double click) closed by Rene Ranzinger
05:17 Ticket #559 (Workspace chooser: New workspace + Return) closed by Rene Ranzinger
05:16 Ticket #683 (Project Editor: Views need double click first open) created by Rene Ranzinger
* Create a project with collaborators, tasklist and events * Restart …
05:09 Ticket #682 (Sample Explorer: Ctrl+S to save) created by Rene Ranzinger
When a sample editor is open and active the shortcut CTRL (or its …
05:09 Ticket #681 (Project Explorer: Ctrl+S to save) created by Rene Ranzinger
When a project editor is open and active the shortcut CTRL (or its …
05:03 Ticket #551 (Project management: "Add new ..." Ok button disabled) closed by Rene Ranzinger
05:01 Ticket #667 (Project Explorer: Empty part when opening project) closed by Rene Ranzinger
04:59 Ticket #640 (Sample manager: Error in create dialog not reset) closed by Rene Ranzinger
04:58 Ticket #625 (Sample Manager : Migration to Eclipse 4 (Sample Plugin)) closed by Rene Ranzinger
04:33 Ticket #556 (Project import: Choose none default name) closed by Rene Ranzinger
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