Timeline



08/22/2016:

22:40 Ticket #744 (Glycan Array - need a metadata section in Master Table) created by sena
Master table view should contain a section to display the overview of …
22:38 Ticket #743 (Glycan Array - wizard: experiment selection) created by sena
In the current wizard (page 3 - block assignment), concentration …
22:31 Ticket #742 (Glycan Array - wizard: sample assignment) created by sena
Need to make the following changes to the "glycan array" creation …
22:27 Ticket #741 (Sample creation - need to see the list of existing samples matching ...) created by sena
When creating a new sample, the user should be able to see the list of …
22:26 Ticket #740 (Need a list of preferred sample names when creating samples for glycan ...) created by sena
Need a list of preferred sample names (populated with the list of …
18:19 Ticket #739 (Glycan Array - histogram should auto-update) created by sena
After generating a histogram, it should automatically update in …
18:15 Ticket #738 (Glycan Array - histogram x-axis labeling) created by sena
Need to change x-axis labeling to use ranges (100-200-300) instead of …
18:06 Ticket #737 (Glycan Array - data count mismatch after using filters) created by sena
After using filters for a while, pressing ‘Reset filters’ produces a …
18:03 Ticket #736 (Glycan Array - apply sorter button cannot be reached) created by sena
On a 1440 x 900 resolution screen the ‘Apply Sorter’ button cannot be …

08/19/2016:

17:36 Ticket #735 (Glycan Array - custom filters) created by sena
Need to provide the ability to save filters as custom filters to be …
17:34 Ticket #734 (Glycan Array - custom sorters) created by sena
We should also allow users to save custom sorters (possibly a list of …

08/18/2016:

22:19 Ticket #733 (GlycanArray - need export into Excel) created by sena
The user should be able to export tables into Excel.
21:29 Ticket #732 (GlycanArray - collapse does not work) created by sena
Collapse option does not work in certain situations. It collapses the …

08/16/2016:

20:30 Ticket #731 (GlycanArray - cartoon preferences do no work) created by sena
When you open cartoon preference page for GlycanArray, image is not …
20:27 Ticket #730 (Workspace XML documents wiped out on error) created by dbrentw
I've noticed during debugging that if an error is encountered loading …

08/15/2016:

18:08 Ticket #729 (Update POI) created by Rene Ranzinger
Update the POI libraries and test if all dependent plugins are still …

08/12/2016:

19:44 Ticket #728 (Manager for experiment designer) created by Rene Ranzinger
Management tool for experiment designer
19:43 Ticket #727 (Annotation Editor: Quantification relative to the protein amount) created by Rene Ranzinger
Add a quantification relative to the protein amount of the cell.
19:41 Ticket #726 (Heatmap: MS based on glycan properties) created by Rene Ranzinger
Heatmap for MS based on glycan properties rather than structures * …

08/10/2016:

21:14 Milestone GRITS - 1.1 SR1 completed
First GRITS 1.1 service release includes: * Migration of Core and …

08/09/2016:

18:55 Ticket #706 (Java 1.8) closed by Rene Ranzinger

08/08/2016:

22:20 Ticket #589 (Sample manager: Species dictionary (32bit)) closed by Rene Ranzinger
21:38 Ticket #725 (Sample manager: Duplicate names for templates) created by Rene Ranzinger
* Create a new template with the Label "New Template" (caps N and T) * …
21:34 Ticket #724 (Sample manager: Exceptions creating new template) created by Rene Ranzinger
Tested with the Demo workspace from the GRITS webpage: * Open …
21:13 Ticket #696 (Annotation Editor: Controls not working for MS profile) closed by Rene Ranzinger
20:01 Ticket #719 (Unannotated peak label setting not persistent) closed by Rene Ranzinger
19:59 Ticket #708 (Annotation Editor: Unable to open MS3 annotations) closed by Rene Ranzinger
19:57 Ticket #723 (Annotation Editor: Size of columns in summary view) created by Rene Ranzinger
When opening the summary view it happens that the GlycanID is cutoff …
19:46 Ticket #655 (Project Explorer: Not possible to double click several entries) closed by Rene Ranzinger
19:45 Ticket #697 (MS Merge: Empty merge report for MS profile data) closed by Rene Ranzinger
19:44 Ticket #722 (Annotation Editor: exception when MS annotations become top) created by Rene Ranzinger
* Open an MS annotation entry * Open a Merge entry (now two editors …

08/05/2016:

22:39 Ticket #623 (Annotation Editor: Label for unannotated peaks) closed by Rene Ranzinger
22:38 Ticket #721 (Annotation Editor: Spectrum viewer settings lost whens scrolling) created by Rene Ranzinger
* Open MS2 spectra with multiple annotation * Open spectrum viewer * …
22:32 Ticket #720 (Annotation Editor: Spectrum viewer biggest peak does not get annotation) created by Rene Ranzinger
If the biggest peak is annotated or any peak is zoomed to take 80% of …
22:28 Ticket #719 (Unannotated peak label setting not persistent) created by dbrentw
If you set the "Show Labels" option on or off, the value is not …
16:44 Ticket #718 (GlycanArray - probe set filter produces wrong number of results) created by sena
Using the 'Probe Set' filter produces the following results: 'Set 32' …
16:39 Ticket #717 (GlycanArray - named lists (in filters) are not sorted) created by sena
Named lists e.g. 'Backbone Type', 'Probe Name', and 'Lipid Name' are …
16:33 Ticket #716 (GlycanArray - filters/sorters do not handle "empty" (unrecognized) ...) created by sena
'#Antenna' does not recognize 16 structures but these appear in …
16:29 Ticket #715 (GlycanArray - add #of items in the list) created by sena
Indicate the number of items in the list on the "Master Table" …

08/04/2016:

23:23 Ticket #660 (MS editor: Correct missing mzXML index) closed by Rene Ranzinger
23:17 Ticket #714 (GELATO: Database index) closed by Rene Ranzinger
23:14 Ticket #714 (GELATO: Database index) created by Rene Ranzinger
Add a database index that allows to load metadata from the GELATO …
19:28 Ticket #612 (Annotation Editor: Displaying Ms profile spectra) closed by Rene Ranzinger

08/03/2016:

23:04 Ticket #626 (GlycanArray - copyTo does not work when sample has a glycan array ...) closed by Rene Ranzinger
23:03 Ticket #638 (GlycanArray - append sample name to the name of the experiment) closed by Rene Ranzinger
23:03 Ticket #713 (Glycan Array: Selecting wrong file type in wizard) created by Rene Ranzinger
In the wizard page the user is ask to upload the data file for the …
22:58 Ticket #712 (Glycan Array: scrollbar not accessible in master table) created by Rene Ranzinger
When opening the master table the area is cut-off but the filter …
22:49 Ticket #635 (GlycanArray - extract additional information from the instrument files) closed by Rene Ranzinger
22:48 Ticket #627 (GlycanArray - remove N/A from concentration type in the wizard) closed by Rene Ranzinger
22:46 Ticket #672 (Glycan Array - S (Sulphate) sorter does not work) closed by Rene Ranzinger
22:44 Ticket #711 (Glycan Array: Image generation failed) created by Rene Ranzinger
Sometimes the image generation seem to fail: HS-S4-AO*, HS-S8-AO*. …
22:40 Ticket #671 (Glycan Array - filter presentation) closed by Rene Ranzinger
22:39 Ticket #653 (Glycan array: new filters) closed by Rene Ranzinger
22:33 Ticket #651 (Glycan array: Linkage filter) closed by Rene Ranzinger
22:33 Ticket #652 (Glycan array: Feature filter) closed by Rene Ranzinger
21:30 Ticket #476 (qrtPCR plugin: uploaded files should be copied to workspace) closed by Rene Ranzinger
21:26 Ticket #616 (qrtPCR master gene list manager: copying into the sublist does not ...) closed by Rene Ranzinger
21:26 Ticket #618 (qrtPCR gene list management: selection/deselection problems) closed by Rene Ranzinger
21:25 Ticket #619 (qrtPCR master gene list manager: deselect button does not work properly) closed by Rene Ranzinger
21:22 Ticket #710 (qrtPCR master gene list manager - filtering) created by Rene Ranzinger
* open the Mouse gene list * Filter/Search for "GT2" + return * Scroll …
21:14 Ticket #709 (qRT-PCR: Gene master list manager - opening of list) created by Rene Ranzinger
Double click on a list row will only work on the cells File Name
21:02 Ticket #629 (ExperimentDesigner - parameter values are not edited correctly in the ...) closed by Rene Ranzinger
20:50 Ticket #443 (Glycan Tree: Filters) closed by Rene Ranzinger
19:31 Ticket #702 (Annotation Editor: Missing scans in LC/MS) closed by Rene Ranzinger
19:30 Ticket #708 (Annotation Editor: Unable to open MS3 annotations) created by Rene Ranzinger
* Annotate the osman LC/MS run with standard settings + 1% cutoff and …
19:13 Ticket #707 (GELATO: Cancel does not do a cleanup) created by Rene Ranzinger
When you cancel a GELATO annotation (tested in init database mode) it …

08/01/2016:

19:31 Ticket #706 (Java 1.8) created by Rene Ranzinger
It seems that there are some problems with Java 1.7 and certain …

07/28/2016:

21:57 Ticket #699 (MS editor: Error loading mzXML snippets) closed by Rene Ranzinger
20:07 Ticket #699 (MS editor: Error loading mzXML snippets) reopened by Rene Ranzinger
It seems that still causes problems with the GELATO annotation. See …
20:00 Ticket #700 (GELATO: No annotation for glycopeptide data) closed by Rene Ranzinger
17:37 Ticket #705 (Annotation Editor: Candidate selection refresh in MS2) created by Rene Ranzinger
* open a MS2 summary with multiple annotations * click in the tickbox …
17:35 Ticket #704 (Annotation Editor: Candidate selection transfer to MS2) created by Rene Ranzinger
* open a new annotation (nothing deselected) * pick a peak and …

07/26/2016:

23:08 Ticket #703 (Grits version number in log) created by Rene Ranzinger
If possible add the version of GRITS in the log file: * either in the …
23:00 Ticket #702 (Annotation Editor: Missing scans in LC/MS) created by Rene Ranzinger
When opening LC data (double click on an MS1) only rows are shown that …
22:37 Ticket #701 (Project creation: project not automatically opened) created by Rene Ranzinger
Open a workspace with Project and Sample entry. * Select the sample …
22:29 Ticket #665 (Annotation Editor: Missing unannotated peaks in MS profile) closed by Rene Ranzinger
22:20 Ticket #663 (Annotation Editor: IndexOutOfBound when opening MS profile data) closed by Rene Ranzinger
22:19 Ticket #662 (MS editor: Error loading mzML) closed by Rene Ranzinger
22:17 Ticket #699 (MS editor: Error loading mzXML snippets) closed by Rene Ranzinger
21:24 Ticket #700 (GELATO: No annotation for glycopeptide data) created by Rene Ranzinger
Attached is an mzXML file with a MS1 scan and one MS2 scan …
20:21 Ticket #699 (MS editor: Error loading mzXML snippets) created by Rene Ranzinger
To make a big LC/MS run easier to handle it is possible to split it in …
Note: See TracTimeline for information about the timeline view.