Timeline



03/09/2017:

21:52 Grits_ProjectPreferenceStore edited by shan
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19:06 Grits_ProjectPreferenceStore edited by shan
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17:13 Grits_ProjectPreferenceStore edited by shan
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03/08/2017:

22:34 Ticket #896 (GELATO: Additional analyte settings) created by Rene Ranzinger
Currently its not possible to annotate using different analyte …
20:30 Grits_ProjectPreferenceStore edited by shan
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19:07 Grits_ProjectPreferenceStore edited by shan
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17:52 Grits_ProjectPreferenceStore edited by shan
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17:33 Ticket #669 (Row number in Nattables) closed by Rene Ranzinger
17:09 Ticket #895 (Duplicate experiment design) created by Rene Ranzinger
In some projects a sample can have multiple experiment designs …
17:07 Ticket #890 (Service lab: Bill generation - Counting of prototocols incorrect) closed by Rene Ranzinger
16:57 Ticket #887 (Project Explorer: Export Task - numbers wrong) closed by Rene Ranzinger
16:54 Ticket #894 (Open and close project) created by Rene Ranzinger
Currently only a single project can be opened or closed in the project …

03/07/2017:

22:50 Ticket #498 (qrtPCR plugin: ability to remove one of the values) closed by Rene Ranzinger
22:49 Ticket #710 (qrtPCR master gene list manager - filtering) closed by Rene Ranzinger
22:48 Ticket #709 (qRT-PCR: Gene master list manager - opening of list) closed by Rene Ranzinger
22:47 Ticket #478 (qrtPCR plugin: handle empty beginning cells in the plate layout) closed by Rene Ranzinger
22:45 Ticket #477 (qrtPCR plugin: preference settings) reopened by Rene Ranzinger
22:44 Ticket #477 (qrtPCR plugin: preference settings) closed by Rene Ranzinger
The spacing is still there (see attached image). Both fields also …
22:38 Ticket #889 (Project Explorer: Export Task - progress bar) closed by Rene Ranzinger
22:32 Ticket #666 (MS editor: Error loading MGF based files) closed by Rene Ranzinger
22:08 Ticket #893 (Migrate archive plugin to E4) created by sena
org.grits.toolbox.entry.archive needs to be migrated to E4
20:55 Ticket #892 (Annotation Editor: Bisection not working for topology) closed by Rene Ranzinger
18:56 Ticket #892 (Annotation Editor: Bisection not working for topology) created by Rene Ranzinger
Mindy reported a problem that the bisection column for topology …
18:31 Ticket #891 (Preference for workspace chooser) created by Rene Ranzinger
A preference page for the workspace chooser. Allowing to remove …

03/06/2017:

17:26 Ticket #873 (Problems with Export) closed by Rene Ranzinger

03/03/2017:

21:07 Ticket #685 (Service lab: Validation of completeness) closed by Rene Ranzinger
21:07 Ticket #784 (Service lab: Validation Wizard - Page 2) closed by Rene Ranzinger
21:05 Ticket #783 (Service lab: Validation Wizard - Page 1) closed by Rene Ranzinger
20:46 Ticket #888 (Service lab: Ctrl + S not working in mangers) closed by Rene Ranzinger
20:45 Ticket #765 (Protocol Price Manager: Save shortcut not working) closed by Rene Ranzinger
20:44 Ticket #794 (Service lab: Version 1 of the service lab ontology) closed by Rene Ranzinger
20:44 Ticket #796 (Service lab: User level documentation) closed by Rene Ranzinger
20:43 Ticket #795 (Service lab: Deployment to prepare consistent use) closed by Rene Ranzinger
20:42 Ticket #793 (Service lab: Final migration of DOE workspace) closed by Rene Ranzinger
20:41 Ticket #689 (Service lab: Bill) closed by Rene Ranzinger
20:28 Ticket #811 (Service lab: Adding protocols to task dialog) closed by Rene Ranzinger
20:27 Ticket #812 (Service lab: Deleting arrows in experiment design) closed by Rene Ranzinger
20:25 Ticket #810 (Service lab: Generation of report) closed by Rene Ranzinger
20:25 Ticket #809 (Service lab: Preparing task manager) closed by Rene Ranzinger
20:22 Ticket #808 (Service lab: Adding dynamic cost component) closed by Rene Ranzinger
19:12 Ticket #890 (Service lab: Bill generation - Counting of prototocols incorrect) created by Rene Ranzinger
Relates to #887 - Problem with the GV010617 project. The project has 4 …
19:05 Ticket #889 (Project Explorer: Export Task - progress bar) created by Rene Ranzinger
There should be a progress bar for exporting task. Although workspaces …
19:02 Ticket #888 (Service lab: Ctrl + S not working in mangers) created by Rene Ranzinger
The save shortcut Ctrl+S or Apple+S is not working in the service lab …
19:01 Ticket #887 (Project Explorer: Export Task - numbers wrong) created by Rene Ranzinger
Problem with the GV010617 project (attached). * Right click in …
17:32 TutorialEclipse edited by sena
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17:31 TutorialEclipse edited by sena
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03/02/2017:

22:22 Ticket #886 (Annotation Editor: Custom annotation - No memory) created by Rene Ranzinger
* Select custom annotation and apply to table * Close annotation * …
22:19 Ticket #885 (Annotation Editor: Custom annotation - Table horizontal freeze) created by Rene Ranzinger
After applying a custom annotation preference to the MS2 table. The …
22:17 Ticket #509 (MS annotation + Merge: Add special peaks to the table) closed by Rene Ranzinger
22:05 Ticket #884 (Experiment Design - Colour configuration for Step-boxes) created by yukie
Request for : Availability for the different colour within the same …
21:50 Ticket #876 (Annotation Editor: Filtering of export - Rows disappearing) closed by Rene Ranzinger
21:33 Ticket #877 (Annotation Editor: Default sort order) closed by Rene Ranzinger
21:32 Ticket #879 (Annotation Editor: Filter OK button disables (2)) closed by Rene Ranzinger
21:28 Ticket #547 (Annotation Editor: Hide unannotated nor working for LCMS) closed by Rene Ranzinger
19:56 Ticket #883 (Searching Function for microarray data) created by yukie
Situation : Allow users to search by Experiment Set Name/ID and/or …
19:53 Ticket #882 (Searching Function) created by yukie
Situation : A request from IC group. Users want to search a particular …
19:49 Ticket #881 (Master Table : Filter/Sorter by Custom Probe) created by yukie
<Plugin/pagckage> <Comments> * Implement the filtering/sorting …
19:49 Ticket #880 (MS Editor: Progressbar for large files) created by Rene Ranzinger
When large MS data files are chosen in the new MS dialog (LCMS) the …
19:32 Ticket #879 (Annotation Editor: Filter OK button disables (2)) created by Rene Ranzinger
* Add a named filter set to your preferences * Open MS annotation * …
19:30 Ticket #804 (Annotation Editor: Filter preferences) closed by Rene Ranzinger
17:57 Ticket #878 (Annotation Editor: Image placement) created by Rene Ranzinger
The new POI version supports image placement within cells. Place the …
17:55 Ticket #877 (Annotation Editor: Default sort order) created by Rene Ranzinger
When opening the MS annotation currently the order of rows it …
17:53 Ticket #876 (Annotation Editor: Filtering of export - Rows disappearing) created by Rene Ranzinger
When running the export and filtering structures: If a peak has only …
17:50 Ticket #792 (Annotation Editor: Filtering of export) closed by Rene Ranzinger
16:35 Ticket #875 (More space for Chart) created by yukie
<Comments> Check the ticket #746 * Required more space between the …
16:31 Ticket #874 (GlycanArray - Probe Library) created by yukie
<Comments> Check ticket #751 : work with this ticket * Required to …

03/01/2017:

22:51 Ticket #852 (Annotation Editor: Does not change perspective) closed by Rene Ranzinger
22:47 Ticket #853 (Annotation Editor: Double click not working on MS1 overview table) closed by Rene Ranzinger
22:33 Ticket #873 (Problems with Export) created by dbrentw
First, there are Export options for Project and Task on the …
22:30 Ticket #854 (Annotation Editor: Blocking opening of entries) closed by Rene Ranzinger
22:25 Ticket #862 (MS Export dialogs : Window size) closed by Rene Ranzinger
22:24 Ticket #872 (Missing scans in annotation table) closed by Rene Ranzinger
22:23 Ticket #866 (Annotation Editor: Filter OK button disables) closed by Rene Ranzinger
22:12 Tickets #822,​829,​838,​839 batch updated by Rene Ranzinger
21:17 Ticket #310 (Exception when changing cartoon preferences) closed by Rene Ranzinger
21:14 Ticket #603 (MS progress bars: stuck on MAC) closed by Rene Ranzinger
20:19 Ticket #872 (Missing scans in annotation table) created by dbrentw
If a parent scan doesn't generate any feature matches, then GRITS …
19:59 Ticket #871 (Delete doesn't do complete cleanup) created by dbrentw
If you delete an annotation from LC-MS/MS, it will delete the archive …

02/28/2017:

21:59 Ticket #870 (Data Entry : GlycanArray Wizard - Searching function) closed by Rene Ranzinger

02/27/2017:

19:48 Ticket #870 (Data Entry : GlycanArray Wizard - Searching function) created by yukie
Need to create a search function for glycan array Set (?)
19:39 Ticket #869 (Experiment Design - Output file) created by yukie
Create a new format for Experiment Design Output for microarray (PDF …
19:37 Ticket #868 (Preference) created by yukie
Look at qRT-PCR preference. Make the similar one for Microarray. …

02/24/2017:

23:02 Ticket #867 (Annotation Editor: Filtering terminal Gal) closed by Rene Ranzinger
22:16 Ticket #540 (Annotation Editor: Filtering as selection option) closed by Rene Ranzinger
22:02 Ticket #867 (Annotation Editor: Filtering terminal Gal) created by Rene Ranzinger
Continuation of #866 * Choose "Do not select anything" * Press ok => …
21:59 Ticket #866 (Annotation Editor: Filter OK button disables) created by Rene Ranzinger
* Open demo workspace sample C annotation * Choose filter from main …
21:56 Ticket #814 (Annotation Editor: filtering) closed by Rene Ranzinger
21:46 Ticket #772 (Column preferences: no warning for excel export in older workspaces) closed by Rene Ranzinger
21:42 Ticket #610 (mzML error for MALDI files) closed by Rene Ranzinger
21:39 Ticket #846 (Project Explorer - Collapsing of levels when creating new entries) closed by Rene Ranzinger
21:35 Ticket #828 (MS Plugins: Column Chooser "Cancel" still applies changes) closed by Rene Ranzinger
20:33 Ticket #865 (General framework for progress bars) created by Rene Ranzinger
We should have one common dialog to handle multistage progress bars …
20:31 Ticket #857 (Annotation Editor: Cancel saving) closed by Rene Ranzinger
20:30 Ticket #863 (Experiment Design - Unavailable to create (Sample Name length)) closed by Rene Ranzinger
20:30 Ticket #864 (General configuration for limits) created by Rene Ranzinger
This was triggered by #863. We need general settings for length of …
20:27 Ticket #802 (GELATO: Use of custome EGP database) closed by Rene Ranzinger
20:22 Ticket #820 (Rows with different scan numbers but same peak ids treated the same) closed by Rene Ranzinger
20:15 Ticket #850 (MS Experiment Wizard: move upload of Full MS file to the first page) closed by Rene Ranzinger
18:41 Ticket #678 (Make product files MAC compatible) closed by Rene Ranzinger
18:41 Ticket #835 (Experiment Design - save it for template) closed by Rene Ranzinger
18:40 Ticket #312 (Experiment designer: All boxes same lengh) closed by Rene Ranzinger
16:17 Ticket #863 (Experiment Design - Unavailable to create (Sample Name length)) created by yukie
<Situation> 1. create an analyte with the name "Human/mouse SHH …

02/23/2017:

22:21 Ticket #862 (MS Export dialogs : Window size) created by Rene Ranzinger
* Maximize the GRITS windows * Open MS annotation * Menu: Tools >> MS …
22:18 Ticket #856 (MS Export dialogs : Button size) closed by Rene Ranzinger
22:02 Ticket #470 (MS editor: Evalute mzML) closed by Rene Ranzinger
22:01 Ticket #262 (MS Editor: Redesign of file handling) closed by Rene Ranzinger
21:59 Ticket #526 (MS editor: Preference list empty) closed by Rene Ranzinger
21:57 Ticket #848 (GELATO: Remember other database) closed by Rene Ranzinger
21:34 Ticket #639 (MS editor: Exceptions loading files from different msconvert version) closed by Rene Ranzinger
21:33 Ticket #695 (GELATO: Neutral Loss renaming and configuration changes) closed by Rene Ranzinger
21:32 Ticket #861 (Experiment Design - saving the previous sample name) closed by Rene Ranzinger
17:19 Ticket #861 (Experiment Design - saving the previous sample name) created by yukie
<Situation> 1. create a new Analyte named "R-10G" 2. Rename the …
16:44 Ticket #860 (MS Merge: Export) closed by Rene Ranzinger
16:43 Ticket #843 (GlycanArray Wizard : Slide Layout does not effect) closed by Rene Ranzinger
00:40 Ticket #858 (GlycanArray : Histogram) closed by Rene Ranzinger

02/22/2017:

20:17 Ticket #801 (MS Merge: Preferences from old workspace 2) closed by Rene Ranzinger
20:16 Ticket #773 (MS Merge: Preferences from old workspace) closed by Rene Ranzinger
20:12 Ticket #788 (MS Merge: Export into Excel does not work) closed by Rene Ranzinger
20:12 Ticket #860 (MS Merge: Export) created by Rene Ranzinger
* Open MS merge entry * Menu Tools >> Merge MS Glycan Annotation >> …
20:03 Ticket #658 (Sample Manager : Multiple template not found error message) closed by Rene Ranzinger
19:57 Ticket #827 (GlycanArray Wizard) closed by Rene Ranzinger
19:56 Ticket #758 (Sample manager: Save shortcut not working) closed by Rene Ranzinger
19:56 Ticket #859 (Archive: Inconsistent save behavouir) created by Rene Ranzinger
When saving an archive entry (after modifications) a messagebox pops …
19:54 Ticket #858 (GlycanArray : Histogram) created by yukie
[Situation] When a user creates a histogram and delete the window of …
19:54 Ticket #682 (Sample Explorer: Ctrl+S to save) closed by Rene Ranzinger
19:41 Ticket #722 (Annotation Editor: exception when MS annotations become top) closed by Rene Ranzinger
19:40 Ticket #721 (Annotation Editor: Spectrum viewer settings lost whens scrolling) closed by Rene Ranzinger
19:37 Ticket #705 (Annotation Editor: Candidate selection refresh in MS2) closed by Rene Ranzinger
19:35 Ticket #704 (Annotation Editor: Candidate selection transfer to MS2) closed by Rene Ranzinger
19:34 Ticket #857 (Annotation Editor: Cancel saving) created by Rene Ranzinger
Related to #821. When the save progress bar is opened there is a …
19:31 Ticket #821 (Save doesn't block for completion) closed by Rene Ranzinger
19:26 Ticket #833 (MS Annotation Editor: table does not get dirty) closed by Rene Ranzinger
19:21 Ticket #807 (Annotation Editor: need export into Byonic Database) closed by Rene Ranzinger
18:19 Ticket #856 (MS Export dialogs : Button size) created by Rene Ranzinger
In the export dialogs for the MS and MERGE make sure both buttons …
18:05 Ticket #472 (Export dialogs - Cancel button not aligned) closed by Rene Ranzinger
18:03 Ticket #855 (Image Cache: Mixing cartoon styles) created by Rene Ranzinger
See attached image - first Image is in Oxford color style rest in CFG. …
17:55 Ticket #854 (Annotation Editor: Blocking opening of entries) created by Rene Ranzinger
* Open MS annotation entry * Open one MS1 entry * Open Project entry * …
17:31 Ticket #853 (Annotation Editor: Double click not working on MS1 overview table) created by Rene Ranzinger
* Open MS annotation entry * On the MS1 overview table double click on …
17:27 Ticket #852 (Annotation Editor: Does not change perspective) created by Rene Ranzinger
* Double click project entry * Double click MS annotation entry => …
17:25 Ticket #624 (Cartoon preferences - add missing layouts) closed by Rene Ranzinger
17:19 Ticket #525 (GELATO: Result names) closed by Rene Ranzinger
17:16 Ticket #836 (Experiment Design - create a new design from template) closed by Rene Ranzinger
17:07 Ticket #799 (GritsUIService: Exception opening the part after long running process) closed by Rene Ranzinger
17:03 Ticket #851 (Project editor: Save shortcut in views) created by Rene Ranzinger
When editing table entries (Collaborator) in the corresponding view …
17:01 Ticket #757 (Project editor: Save shortcut not working) closed by Rene Ranzinger

02/21/2017:

23:10 Ticket #850 (MS Experiment Wizard: move upload of Full MS file to the first page) created by sena
New -> MS Experiment To reduce the user's confusion about the type of …
20:25 Ticket #10 (Remember position in annotation table when changing annotations) closed by Rene Ranzinger
20:23 Ticket #9 (Image quality of scaled images) closed by Rene Ranzinger
20:18 Ticket #849 (GELATO: Error logs when cancel) created by Rene Ranzinger
This is a extension of #707. The problems described in the ticket are …
20:11 Ticket #707 (GELATO: Cancel does not do a cleanup) closed by Rene Ranzinger
20:04 Ticket #693 (GELATO: Disabling of Add buttons) closed by Rene Ranzinger
20:02 Ticket #508 (GELATO: Extend filters) closed by Rene Ranzinger
18:20 Ticket #848 (GELATO: Remember other database) created by Rene Ranzinger
When using a other database in GELATO next time a GELATO wizard it …
18:18 Ticket #847 (GELATO: NExt button on Last page not disabled) created by Rene Ranzinger
If you go through the GELATO wizard to the last page the NEXT button …

02/20/2017:

22:22 Ticket #791 (Annotation Editor: New filtering) closed by Rene Ranzinger
22:21 Ticket #681 (Project Explorer: Ctrl+S to save) closed by Rene Ranzinger
22:19 Ticket #803 (Annotation Editor: Export a byonic database from a annotation result) closed by Rene Ranzinger
21:24 Ticket #846 (Project Explorer - Collapsing of levels when creating new entries) created by Rene Ranzinger
Choose a project with an MS annotation and expand project/sample/ms so …
21:16 Ticket #311 (Experiment designer: Wrap text in protocol boxes) closed by Rene Ranzinger
20:57 Ticket #522 (ExperimentDesigner - creating a protocol variant with the same name as ...) closed by Rene Ranzinger
20:54 Ticket #455 (Issue with Filter dialog) closed by Rene Ranzinger
20:53 Ticket #817 (Rows in MS Glycan table not becoming invisible) closed by Rene Ranzinger
20:50 Ticket #825 (Bugs in MS tables) closed by Rene Ranzinger
20:49 Ticket #815 (Exception when running GELATO but not keeping window active) closed by Rene Ranzinger
20:49 Ticket #517 (Glycan DB cache seems to longer work) closed by Rene Ranzinger
20:46 Ticket #729 (Update POI) closed by Rene Ranzinger
20:46 Ticket #288 (Migration to org.grits.toolbox.entry.ms.annotation.glycan.merge) closed by Rene Ranzinger
20:46 Ticket #287 (Migration to org.grits.toolbox.entry.ms.annotation.glycan) closed by Rene Ranzinger
20:46 Ticket #286 (Mirgration to org.grits.toolbox.entry.ms.annotation) closed by Rene Ranzinger
20:46 Ticket #285 (Migration org.grits.toolbox.entry.ms) closed by Rene Ranzinger
20:43 Ticket #834 (Data Entry : GlycanArray Wizard - does not reflect the change of slide#) closed by Rene Ranzinger
20:43 Ticket #823 (GlycanArray - all experiments are created under one sample) closed by Rene Ranzinger
19:25 Ticket #845 (qrt-pcr: Plate layout "delete cell" does not always work) created by sena
When creating a new plate layout by assigning genes to wells manually …
19:20 Ticket #844 (Annotation Editor: decide how to lock selections) created by sena
We need a mechanism in the annotation table to lock the selected rows …

02/17/2017:

16:45 Ticket #843 (GlycanArray Wizard : Slide Layout does not effect) created by yukie
<Situation> select 4 slides, and click "Next" then, go back and change …

02/16/2017:

21:52 Ticket #842 (Glycay Array - Wizard: slide number change should warn user) created by sena
<Situation> select 2 slides, and click "Next" then, go back and change …
17:57 Ticket #350 (Table: Experiment designer data for fly staining) closed by Rene Ranzinger

02/14/2017:

17:03 Ticket #841 (Put workspace name at top of GRITS) created by dbrentw
It would be nice if the user knew which workspace they were working on …

02/08/2017:

22:30 Ticket #840 (Data Entry : Template for all the information of a slide) created by yukie
<Situation> Users are able to copy and past a slide meta-data …
22:27 Ticket #839 (Data Entry : GlycanArray Wizard - without using mouse-clicking) created by yukie
<Situation> When a user enters a meta-data, only the mouse-clicking …
22:24 Ticket #838 (Master Table : reload function) created by yukie
<Situation> when a user modified sort/filter/or other stuff, …
22:21 Ticket #837 (Data Entry : function for re-entering sample metadata) created by yukie
<Situation> After entering sample metadata (e.g. concentration of each …
20:21 Ticket #836 (Experiment Design - create a new design from template) created by yukie
<Situation> 1. Sample (right click) -> New -> Experiment Design 2. …
20:16 Ticket #835 (Experiment Design - save it for template) created by yukie
<Situation> 1. Open a new Experiment Design 2. Add one box "Organic …
17:44 Ticket #834 (Data Entry : GlycanArray Wizard - does not reflect the change of slide#) created by yukie
<Situation> 1. select 2 slides, and click "Next" 2. then, go back and …
17:36 Ticket #833 (MS Annotation Editor: table does not get dirty) created by sena
If I open an annotation entry and make selection changes or filtering, …
17:35 Ticket #832 (Data Entry : GlycanArray Wizard - misalignment of "UploadFile" button) created by yukie
<Situation> When I enter a new ProScan file, the "UploadFile" button …
17:28 Ticket #831 (Data Entry : GlycanArray Wizard) created by yukie
<Better to be> allow users to enter the information with …
17:20 Ticket #830 (Add "position in a box" row for Tracking @sample description) created by yukie
<Request from Imperial College : microarray team> Create a new row …
17:09 Ticket #829 (Reloading a window) created by yukie
Check how to reload the window (for data analysis). (Automatic (time?) …
16:51 Ticket #828 (MS Plugins: Column Chooser "Cancel" still applies changes) created by sena
In all MS plugin tables (probably elsewhere where columnchooser is …
16:29 Ticket #827 (GlycanArray Wizard) created by yukie
When enter a new micro array data If the concentration value are not …
15:58 Ticket #826 (Preference - pop-up or high-light an wrong/missing data entry when a ...) created by yukie
Where : File -> Preference Situation : (it can be the same for other …
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