Timeline



03/30/2017:

17:54 FileOrganization edited by dbrentw
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17:31 FileOrganization edited by dbrentw
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17:29 2.xml attached to FileOrganization by dbrentw
Example non-MS1 scan file
17:29 settings.xml attached to FileOrganization by dbrentw
example settings.xml
17:29 dataHeader.xml attached to FileOrganization by dbrentw
Example dataHeader.xml
17:29 overview_scan1.xml attached to FileOrganization by dbrentw
Example MS1 overview scan data
17:28 data_forLCMSMS.xml attached to FileOrganization by dbrentw
Example data.xml for LC-MS/MS projects
17:28 data.xml attached to FileOrganization by dbrentw
Example data.xml for non-LC-MS/MS projects
17:27 FileOrganization edited by dbrentw
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17:24 FileOrganization edited by dbrentw
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17:24 FileOrganization edited by dbrentw
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17:24 FileOrganization edited by dbrentw
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17:23 FileOrganization created by dbrentw
17:19 TutorialGrits edited by dbrentw
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16:30 GritsTutorial_ObjectModelGritsSampleEditor edited by shan
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16:28 GritsTutorial_ObjectModelGritsSampleEditor edited by shan
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00:17 GritsDocumentation edited by shan
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03/27/2017:

23:00 GritsTutorial_OntologyGritsSampleEditor edited by shan
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03/24/2017:

22:32 GritsTutorial_OntologyGritsSampleEditor edited by shan
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22:12 GritsTutorial_OntologyGritsSampleEditor edited by shan
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18:14 GritsTutorial_OntologyGritsSampleEditor edited by shan
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03/23/2017:

21:05 GritsTutorial_OntologyGritsSampleEditor edited by shan
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19:28 GRITSObjectModel created by dbrentw
19:28 TutorialGrits edited by dbrentw
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19:16 GRITStable edited by dbrentw
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19:15 GRITStable created by dbrentw
19:14 TutorialGrits edited by dbrentw
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19:13 TutorialGrits edited by dbrentw
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19:11 Presentation created by dbrentw
19:10 TutorialGrits edited by dbrentw
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17:25 Ticket #916 (Maor Excel export: Add key peaks) created by Rene Ranzinger
Maor will provide an Excel file with key peaks (three columns): * …
16:53 sample_ontology.png attached to GritsTutorial_OntologyGritsSampleEditor by shan
16:53 GritsTutorial_OntologyGritsSampleEditor edited by shan
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03/22/2017:

18:31 Ticket #915 (Experiment design: Perspective not found) closed by Rene Ranzinger
17:49 Ticket #590 (Sample manager: Progressbar for loading dictionaries) closed by Rene Ranzinger
17:44 Ticket #826 (Preference - pop-up or high-light an wrong/missing data entry when a ...) closed by Rene Ranzinger
17:34 Ticket #531 (GELATO: Batch annotation - dublicated entry names) closed by Rene Ranzinger
17:28 Ticket #915 (Experiment design: Perspective not found) created by Rene Ranzinger
When opening an experiment design (New or View) the following error is …
17:26 Ticket #895 (Duplicate experiment design) closed by Rene Ranzinger

03/21/2017:

20:02 Ticket #914 (Documentation policy) created by Rene Ranzinger
Design a policy for documentation to define: * what gets documented * …
03:14 Ticket #913 (MS Editor: Treeview for scan hierarchy) created by Rene Ranzinger
Add a new View in the same place as the project explorer that is part …
03:08 Ticket #912 (Annotation Editor: Export structure) created by Rene Ranzinger
Have context menu in the annotation table and the fragment table that …
01:22 Ticket #911 (MS annotation editor: Mark standards) created by Rene Ranzinger
* When choosing a database and add it to the GELATO settings (#896) …
01:17 Ticket #910 (MS Merge: One sided interactive merge) created by Rene Ranzinger
In the merge report allow the user to pick a cell and open the …
01:14 Ticket #909 (GELATO: Allow selection of file to annotate) created by Rene Ranzinger
On the first GELATO page allow the user to select for each MS entry …
01:00 Ticket #908 (Zaia group collaboration) created by Rene Ranzinger
Add a new plugin that allows the invocation of the Joshua Klein …
00:51 Ticket #907 (MS Editor: integrate msconvert) created by Rene Ranzinger
* Add a preference page for MS convert settings that allows to choose …
00:43 Ticket #906 (MS Editor: Redesign of editor - MS properties) created by Rene Ranzinger
All changes are related to the MS properties tab in the MS entry and …
00:29 Ticket #343 (MS experiments: add support for standards) closed by Rene Ranzinger
00:28 Ticket #905 (Annotation Editor: Support for Standards for quantification) created by Rene Ranzinger
Add the option to select a peak (m/z) as standard peak to normalize …

03/20/2017:

22:28 GritsTutorial_ObjectModelGritsSampleEditor edited by shan
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22:27 datamodel.jpg attached to GritsTutorial_ObjectModelGritsSampleEditor by shan
22:23 ClassDiagram.png attached to GritsTutorial_ObjectModelGritsSampleEditor by shan
18:32 Ticket #885 (Annotation Editor: Custom annotation - Table horizontal freeze) reopened by dbrentw
15:09 Service_Lab_Plugin edited by shan
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15:07 Service_Lab_Plugin edited by shan
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15:06 project_validation.png attached to Service_Lab_Plugin by shan
15:05 Service_Lab_Plugin edited by shan
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15:01 Grits_ProjectPreferenceStore edited by shan
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15:00 Grits_ProjectPreferenceStore edited by shan
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14:54 using_preference_store.png attached to Grits_ProjectPreferenceStore by shan
14:54 preference_store_enum_and_values.png attached to Grits_ProjectPreferenceStore by shan
14:53 Grits_ProjectPreferenceStore edited by shan
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04:02 Ticket #904 (Database bot: Create Plugin) created by Rene Ranzinger
Create the database bot plugin

03/15/2017:

22:46 Service_Lab_Plugin edited by shan
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18:41 Ticket #897 (qRT-PCR : Plate Layout Entry Wizard - does not affect width and height) closed by Rene Ranzinger
18:39 Ticket #477 (qrtPCR plugin: preference settings) closed by Rene Ranzinger
18:37 Ticket #527 (MS editor: Progress bar for creation) closed by Rene Ranzinger
18:34 Ticket #903 (MS Editor: Cancel opening files can not be deleted) created by Rene Ranzinger
* double click MS entry * Cancel the opening operation (e.g. for later …
18:30 Ticket #880 (MS Editor: Progressbar for large files) closed by Rene Ranzinger
18:02 Service_Lab_Plugin edited by shan
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17:42 Service_Lab_Plugin edited by shan
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17:04 Ticket #902 (Nucleotide sugar plugin: Create plugin) created by Rene Ranzinger
Create a new plugin for the Maor group to work on nucleotide sugars. …
16:57 Ticket #901 (Annotation Editor: Custom intensity filter) created by Rene Ranzinger
Add a custom filter (similar to Array) that filters by a MS specific …
16:56 Ticket #900 (Annotation Editor: MS annotation property does not remember score filter) created by Rene Ranzinger
When adding the post filtering and applying an intensity score filter …

03/14/2017:

22:16 Ticket #885 (Annotation Editor: Custom annotation - Table horizontal freeze) closed by Rene Ranzinger
22:12 Ticket #899 (Using "use specified structure settings" option disables wizard pages) closed by Rene Ranzinger
22:11 Ticket #657 (Sample Manager : Clean/Optimize API classes for Sample Ontology) closed by Rene Ranzinger
22:07 Ticket #894 (Open and close project) closed by Rene Ranzinger
21:19 Service_Lab_Plugin edited by shan
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21:16 Service_Lab_Plugin edited by shan
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18:54 Ticket #899 (Using "use specified structure settings" option disables wizard pages) created by dbrentw
If you tick the "use specified structure settings from database" …
17:55 Service_Lab_Plugin edited by shan
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15:14 Service_Lab_Plugin edited by shan
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00:43 Service_Lab_Plugin edited by shan
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03/13/2017:

22:10 Service_Lab_Plugin edited by shan
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18:25 Service_Lab_Plugin edited by shan
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17:30 Ticket #898 (qRT-PCR : Plate Layout Entry Wizard "Multiple problems have occurred") created by yukie
[Situation] After doing the ticket #897, when I re-open the existing …
17:22 Ticket #897 (qRT-PCR : Plate Layout Entry Wizard - does not affect width and height) created by yukie
[Situation] 1. Open a new "Plate Layout Tool" 2. Change the number …

03/11/2017:

01:05 Service_Lab_Plugin edited by shan
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03/10/2017:

18:55 Service_Lab_Plugin edited by shan
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17:29 Grits_ProjectPreferenceStore edited by shan
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17:13 Grits_ProjectPreferenceStore edited by shan
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03/09/2017:

21:52 Grits_ProjectPreferenceStore edited by shan
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19:06 Grits_ProjectPreferenceStore edited by shan
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17:13 Grits_ProjectPreferenceStore edited by shan
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03/08/2017:

22:34 Ticket #896 (GELATO: Additional analyte settings) created by Rene Ranzinger
Currently its not possible to annotate using different analyte …
20:30 Grits_ProjectPreferenceStore edited by shan
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19:07 Grits_ProjectPreferenceStore edited by shan
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17:52 Grits_ProjectPreferenceStore edited by shan
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17:33 Ticket #669 (Row number in Nattables) closed by Rene Ranzinger
17:09 Ticket #895 (Duplicate experiment design) created by Rene Ranzinger
In some projects a sample can have multiple experiment designs …
17:07 Ticket #890 (Service lab: Bill generation - Counting of prototocols incorrect) closed by Rene Ranzinger
16:57 Ticket #887 (Project Explorer: Export Task - numbers wrong) closed by Rene Ranzinger
16:54 Ticket #894 (Open and close project) created by Rene Ranzinger
Currently only a single project can be opened or closed in the project …

03/07/2017:

22:50 Ticket #498 (qrtPCR plugin: ability to remove one of the values) closed by Rene Ranzinger
22:49 Ticket #710 (qrtPCR master gene list manager - filtering) closed by Rene Ranzinger
22:48 Ticket #709 (qRT-PCR: Gene master list manager - opening of list) closed by Rene Ranzinger
22:47 Ticket #478 (qrtPCR plugin: handle empty beginning cells in the plate layout) closed by Rene Ranzinger
22:45 Ticket #477 (qrtPCR plugin: preference settings) reopened by Rene Ranzinger
22:44 Ticket #477 (qrtPCR plugin: preference settings) closed by Rene Ranzinger
The spacing is still there (see attached image). Both fields also …
22:38 Ticket #889 (Project Explorer: Export Task - progress bar) closed by Rene Ranzinger
22:32 Ticket #666 (MS editor: Error loading MGF based files) closed by Rene Ranzinger
22:08 Ticket #893 (Migrate archive plugin to E4) created by sena
org.grits.toolbox.entry.archive needs to be migrated to E4
20:55 Ticket #892 (Annotation Editor: Bisection not working for topology) closed by Rene Ranzinger
18:56 Ticket #892 (Annotation Editor: Bisection not working for topology) created by Rene Ranzinger
Mindy reported a problem that the bisection column for topology …
18:31 Ticket #891 (Preference for workspace chooser) created by Rene Ranzinger
A preference page for the workspace chooser. Allowing to remove …

03/06/2017:

17:26 Ticket #873 (Problems with Export) closed by Rene Ranzinger

03/03/2017:

21:07 Ticket #685 (Service lab: Validation of completeness) closed by Rene Ranzinger
21:07 Ticket #784 (Service lab: Validation Wizard - Page 2) closed by Rene Ranzinger
21:05 Ticket #783 (Service lab: Validation Wizard - Page 1) closed by Rene Ranzinger
20:46 Ticket #888 (Service lab: Ctrl + S not working in mangers) closed by Rene Ranzinger
20:45 Ticket #765 (Protocol Price Manager: Save shortcut not working) closed by Rene Ranzinger
20:44 Ticket #794 (Service lab: Version 1 of the service lab ontology) closed by Rene Ranzinger
20:44 Ticket #796 (Service lab: User level documentation) closed by Rene Ranzinger
20:43 Ticket #795 (Service lab: Deployment to prepare consistent use) closed by Rene Ranzinger
20:42 Ticket #793 (Service lab: Final migration of DOE workspace) closed by Rene Ranzinger
20:41 Ticket #689 (Service lab: Bill) closed by Rene Ranzinger
20:28 Ticket #811 (Service lab: Adding protocols to task dialog) closed by Rene Ranzinger
20:27 Ticket #812 (Service lab: Deleting arrows in experiment design) closed by Rene Ranzinger
20:25 Ticket #810 (Service lab: Generation of report) closed by Rene Ranzinger
20:25 Ticket #809 (Service lab: Preparing task manager) closed by Rene Ranzinger
20:22 Ticket #808 (Service lab: Adding dynamic cost component) closed by Rene Ranzinger
19:12 Ticket #890 (Service lab: Bill generation - Counting of prototocols incorrect) created by Rene Ranzinger
Relates to #887 - Problem with the GV010617 project. The project has 4 …
19:05 Ticket #889 (Project Explorer: Export Task - progress bar) created by Rene Ranzinger
There should be a progress bar for exporting task. Although workspaces …
19:02 Ticket #888 (Service lab: Ctrl + S not working in mangers) created by Rene Ranzinger
The save shortcut Ctrl+S or Apple+S is not working in the service lab …
19:01 Ticket #887 (Project Explorer: Export Task - numbers wrong) created by Rene Ranzinger
Problem with the GV010617 project (attached). * Right click in …
17:32 TutorialEclipse edited by sena
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17:31 TutorialEclipse edited by sena
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03/02/2017:

22:22 Ticket #886 (Annotation Editor: Custom annotation - No memory) created by Rene Ranzinger
* Select custom annotation and apply to table * Close annotation * …
22:19 Ticket #885 (Annotation Editor: Custom annotation - Table horizontal freeze) created by Rene Ranzinger
After applying a custom annotation preference to the MS2 table. The …
22:17 Ticket #509 (MS annotation + Merge: Add special peaks to the table) closed by Rene Ranzinger
22:05 Ticket #884 (Experiment Design - Colour configuration for Step-boxes) created by yukie
Request for : Availability for the different colour within the same …
21:50 Ticket #876 (Annotation Editor: Filtering of export - Rows disappearing) closed by Rene Ranzinger
21:33 Ticket #877 (Annotation Editor: Default sort order) closed by Rene Ranzinger
21:32 Ticket #879 (Annotation Editor: Filter OK button disables (2)) closed by Rene Ranzinger
21:28 Ticket #547 (Annotation Editor: Hide unannotated nor working for LCMS) closed by Rene Ranzinger
19:56 Ticket #883 (Searching Function for microarray data) created by yukie
Situation : Allow users to search by Experiment Set Name/ID and/or …
19:53 Ticket #882 (Searching Function) created by yukie
Situation : A request from IC group. Users want to search a particular …
19:49 Ticket #881 (Master Table : Filter/Sorter by Custom Probe) created by yukie
<Plugin/pagckage> <Comments> * Implement the filtering/sorting …
19:49 Ticket #880 (MS Editor: Progressbar for large files) created by Rene Ranzinger
When large MS data files are chosen in the new MS dialog (LCMS) the …
19:32 Ticket #879 (Annotation Editor: Filter OK button disables (2)) created by Rene Ranzinger
* Add a named filter set to your preferences * Open MS annotation * …
19:30 Ticket #804 (Annotation Editor: Filter preferences) closed by Rene Ranzinger
17:57 Ticket #878 (Annotation Editor: Image placement) created by Rene Ranzinger
The new POI version supports image placement within cells. Place the …
17:55 Ticket #877 (Annotation Editor: Default sort order) created by Rene Ranzinger
When opening the MS annotation currently the order of rows it …
17:53 Ticket #876 (Annotation Editor: Filtering of export - Rows disappearing) created by Rene Ranzinger
When running the export and filtering structures: If a peak has only …
17:50 Ticket #792 (Annotation Editor: Filtering of export) closed by Rene Ranzinger
16:35 Ticket #875 (More space for Chart) created by yukie
<Comments> Check the ticket #746 * Required more space between the …
16:31 Ticket #874 (GlycanArray - Probe Library) created by yukie
<Comments> Check ticket #751 : work with this ticket * Required to …

03/01/2017:

22:51 Ticket #852 (Annotation Editor: Does not change perspective) closed by Rene Ranzinger
22:47 Ticket #853 (Annotation Editor: Double click not working on MS1 overview table) closed by Rene Ranzinger
22:33 Ticket #873 (Problems with Export) created by dbrentw
First, there are Export options for Project and Task on the …
22:30 Ticket #854 (Annotation Editor: Blocking opening of entries) closed by Rene Ranzinger
22:25 Ticket #862 (MS Export dialogs : Window size) closed by Rene Ranzinger
22:24 Ticket #872 (Missing scans in annotation table) closed by Rene Ranzinger
22:23 Ticket #866 (Annotation Editor: Filter OK button disables) closed by Rene Ranzinger
22:12 Tickets #822,​829,​838,​839 batch updated by Rene Ranzinger
21:17 Ticket #310 (Exception when changing cartoon preferences) closed by Rene Ranzinger
21:14 Ticket #603 (MS progress bars: stuck on MAC) closed by Rene Ranzinger
20:19 Ticket #872 (Missing scans in annotation table) created by dbrentw
If a parent scan doesn't generate any feature matches, then GRITS …
19:59 Ticket #871 (Delete doesn't do complete cleanup) created by dbrentw
If you delete an annotation from LC-MS/MS, it will delete the archive …

02/28/2017:

21:59 Ticket #870 (Data Entry : GlycanArray Wizard - Searching function) closed by Rene Ranzinger
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