Timeline



10/12/2017:

19:49 Ticket #1018 (MS Editor: adding the same file sometimes overwrites the previous content) closed by sena
the same file cannot be uploaded the second time if the category is …
18:13 Ticket #1029 (TIM data does not use polarity) created by dbrentw
the phoney parent scan of TIM data does not get its polarity set.
17:20 Ticket #1004 (MS Annotation: incorrect columns are displayed in scientific notation ...) closed by sena
17:12 Ticket #1001 (MSConvert: Does not work for certain folder and filenames) closed by sena

10/11/2017:

23:02 Ticket #1012 (MS Annotation: LC-MS/MS experiment does not show the annotations) closed by sena
21:06 Ticket #1020 (MS Profile doesn't show annotations) closed by sena
20:42 Ticket #1015 (GELATO Wizard: dialog for adding databases is too small) closed by sena
20:42 Ticket #1006 (MS File Upload: file filter for mzXML/mxML not working) closed by sena
20:35 Ticket #1016 (MS Merge: unable to edit alias column) closed by sena
19:35 Ticket #1022 (MS Annotation: Change the label and contents for "Polarity is ...) closed by sena
19:33 Ticket #1021 (MS Experiment Types: change labels) closed by sena
19:31 Ticket #1019 (MS Editor: changes seem to be saved even if you don't save them) closed by sena
I've reverted this behavior since there is no way to cancel (revert) …
19:28 Ticket #1011 (MS Annotation Spectra: legend of the coloring is missing for MS1 ...) closed by sena
19:25 Ticket #1007 (MS Editor: allow opening of mzXML/mzML type of quantification files) closed by sena
19:22 Ticket #1008 (MS GELATO Wizard: finish button does not get enabled even if the ...) closed by sena
19:21 Ticket #1000 (External Quantification: does not check the validity of the file) closed by sena
19:14 Ticket #906 (MS Editor: Redesign of editor - MS properties) closed by sena
19:12 Ticket #847 (GELATO: NExt button on Last page not disabled) closed by sena
19:11 Ticket #972 (Custom Annotation: buttons) closed by sena
18:59 Ticket #1028 (MS Annotation: TIM annotation entry does not open) created by sena
I have run a GELATO annotation with TIM data. Although the annotation …
18:28 Ticket #1027 (Running GELATO multiple times on same DB gives different results) created by dbrentw
Open GRITS and perform GELATO on an MS entry. Then, re-run GELATO on …
17:35 Ticket #596 (Annotation Editor: Opening MS3 with with precursor annotation (MAC)) closed by sena
17:34 Ticket #910 (MS Merge: One sided interactive merge) closed by sena
17:33 Ticket #961 (MS Merge: Export into Excel does not work) closed by sena
tested in revision [2729]
17:25 Ticket #950 (Database Bot: new label for Browse buttons) closed by sena

10/09/2017:

21:04 Ticket #1026 (MS Annotation: TIM experiment in negative mode does not get any annotations) created by sena
Here is the link to the mzxml file to be annotated: …
20:11 Ticket #1025 (Reverse workflow for Byonic) created by Rene Ranzinger
* Add a new menu entry to annotate a Byonic data file with glycomics …
17:25 Ticket #1024 (Custom Annotation: ship GRITS with pre-defined custom annotation ...) created by sena
Similar to GELATO settings that come with GRITS (from the jar), …
17:23 Ticket #1023 (GRITS Intro: add a "do not show again" checkbox) created by sena
When there are no projects in a workspace, GRITS intro page is shown …
17:20 Ticket #1022 (MS Annotation: Change the label and contents for "Polarity is ...) created by sena
The column "Polarity is Positive" should be renamed to "Polarity" and …
17:18 Ticket #1021 (MS Experiment Types: change labels) created by sena
MS Experiment Types should be labeled as follows: LC-MS/MS | …

10/06/2017:

18:05 Ticket #583 (Annotation Editor: Column chooser for candidate table does not show) reopened by sena
we still don't see column chooser in the lower table

10/05/2017:

20:53 Ticket #1020 (MS Profile doesn't show annotations) created by dbrentw
Like the LC-MS/MS issue, after the addition of support for multiple …

10/04/2017:

23:26 Ticket #1019 (MS Editor: changes seem to be saved even if you don't save them) created by sena
If you add files to a MS entry and close it without saving, the …
19:16 Ticket #1018 (MS Editor: adding the same file sometimes overwrites the previous content) created by sena
If the same name file (instrument file) is uploaded as both annotation …

10/03/2017:

23:50 Ticket #1017 (MS Merge: ability to hide rows with common annotations) created by sena
In the merge report, create an option to hide rows which have the same …
23:48 Ticket #1016 (MS Merge: unable to edit alias column) created by sena
We have added 3 experiments for the merge. Editing the alias for the …
23:45 Ticket #1015 (GELATO Wizard: dialog for adding databases is too small) created by sena
The part of the reducing end name/mass is not visible on small screen. …
23:43 Ticket #1014 (MS Annotation: multiple external quantification files error) created by sena
If there are multiple instrument external quantification files added …

09/29/2017:

22:09 Ticket #1013 (ProjectExplorer shows incorrect icons for entries and invalid contents) created by sena
I've seen strange workspaces where the sample/archive/ms entries are …
19:22 Ticket #1012 (MS Annotation: LC-MS/MS experiment does not show the annotations) created by sena
I've created a LC-MS experiment using the following file: …

09/26/2017:

23:01 Ticket #1011 (MS Annotation Spectra: legend of the coloring is missing for MS1 ...) created by sena
There is a legend showing "observed - red", "annotated", "unannotated" …
22:56 Ticket #1010 (MS Annotation Spectra: image export of spectra does not contain cartoons) created by sena
When you have annotated spectra with cartoons and select save as …
22:54 Ticket #1009 (GELATO Annotation: no annotation for Velos files with "trust charge state") created by sena
Velos files do not include charge states. If you set the "trust charge …
22:52 Ticket #1008 (MS GELATO Wizard: finish button does not get enabled even if the ...) created by sena
When you open GELATO wizard, it shows the first annotation file as …
22:48 Ticket #1007 (MS Editor: allow opening of mzXML/mzML type of quantification files) created by sena
Currently only annotation mzXML/mzML file can be selected to open in …
22:46 Ticket #1006 (MS File Upload: file filter for mzXML/mxML not working) created by sena
When uploading a file from the MS editor, the file filter for …
22:43 Ticket #1005 (MS GELATO wizard: default Mass type selection) created by sena
default selection should be "Monoisotopic" instead of "Average"

09/22/2017:

19:29 Ticket #1004 (MS Annotation: incorrect columns are displayed in scientific notation ...) created by sena
Only the intensity columns are supposed to be shown in scientific …

09/21/2017:

20:45 Ticket #1003 (Issues w/ O-glycans) created by dbrentw
Often, in the Composition column for Oglycan datasets, there are …
19:33 Ticket #1002 (External Quantification: Locking of files does not work) created by sena
I've uploaded a full ms file to an MS entry and then opened up the …
19:16 Ticket #1001 (MSConvert: Does not work for certain folder and filenames) created by sena
From Mindy: "I am testing and I tried to convert RAW instrument files …
19:14 Ticket #1000 (External Quantification: does not check the validity of the file) created by sena
I've uploaded a raw file with "external quantification" category but …

09/19/2017:

17:57 Ticket #956 (GELATO: Other database invalid file) closed by sena
17:39 Ticket #926 (Custome Annotations: Delete causes error block of preference page) closed by sena
17:39 Ticket #925 (Custom Annotation - Delete annotations) closed by sena
17:31 Ticket #955 (new GELATO Annotation: problems when you start with no entry selected) closed by sena
17:31 Ticket #946 (MS editor: hide rows with no selection) closed by sena
17:28 Ticket #957 (GELATO: No MS selection) closed by sena
17:25 Ticket #998 (Mass Spec: External Quantification Dialog - extra label) closed by sena
17:24 Ticket #907 (MS Editor: integrate msconvert) closed by sena

09/14/2017:

22:59 Ticket #960 (New intensity and counting scores for GELATO) closed by sena
verified the existence of raw intensity and raw counting score columns.
22:55 Ticket #339 (GELATO: Preferences) closed by sena
22:55 Ticket #896 (GELATO: Additional analyte settings) closed by sena
verified that annotation goes through multiple databases

09/13/2017:

23:05 Ticket #621 (Core: Crash of GRITS if log folder is not writeable) closed by sena
21:56 Ticket #909 (GELATO: Allow selection of file to annotate) closed by sena
21:55 Ticket #841 (Put workspace name at top of GRITS) closed by sena
21:53 Ticket #570 (MS annotation spetrum viewer: unannotated preference not persisted) closed by sena
21:45 Ticket #859 (Archive: Inconsistent save behavouir) closed by sena
verified
21:40 Ticket #999 (MS Summary View: clicking column header corrupts table) created by sena
In Summary View (for MS2) if you click the column header twice, the …
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