This is the summary page of all changes we had to do while switching from NatTable version 0.9 to 1.4.0

org.grits.toolbox plugin

• product files: removed org.eclipse.nebula.widgets.nattable and added required dependencies by clicking "Add Required Plugins"

org.grits.toolbox.display.control.table plugin

• org.grits.toolbox.display.control.table.tablecore.GRITSNatTableStyleConfiguration - CellConfigAttributes.EXPORT_FORMATTER is moved to ExportConfigAttributes.EXPORT_FORMATTER in version 1.4.0
• org.grits.toolbox.display.control.table.datamodel.GRITSSortModel - needs to implement method public Comparator<?> getColumnComparator(int columnIndex)
• org.grits.toolbox.display.control.table.datamodel.GRITSTable
  • method viewportLayer.moveColumnPositionIntoViewport(i, false); method signature has changed, need to remove the boolean arg. --> viewportLayer.moveColumnPositionIntoViewport(i);
  • similarly, method viewportLayer.moveCellPositionIntoViewport(0, 0, true); method signature has changed, need to remove the boolean arg. --> viewportLayer.moveCellPositionIntoViewport(0, 0_);
• dependencies have been changed to remove org.eclipse.nebula.widgets.nattable and to add org.eclipse.nebula.widgets.nattable.core and ca.odell.glazedlists

org.grits.toolbox.entry.ms plugin

• dependencies have been changed to remove org.eclipse.nebula.widgets.nattable and to add org.eclipse.nebula.widgets.nattable.core and org.eclipse.nebula.widgets.grid
• deprecated method is replaced
  • org.grits.toolbox.entry.ms.dialog.MassSpecPeakIntensityGrid - removeAll is deprecated, use disposeAllItems instead
  • the same are done in org.grits.toolbox.entry.ms.preference.MassSpecCustomAnnotationsPreferenceUI and org.grits.toolbox.entry.ms.preference.MassSpecStandardQuantPreferenceUI
• org.grits.toolbox.entry.ms.tablehelpers.MassSpecTable - the method signature for this.columnHideShowLayer.showColumnIndexes(iIndices) has changed to use a Collection instead of an integer array.

org.grits.toolbox.entry.ms.annotation plugin

• dependencies have been changed to remove org.eclipse.nebula.widgets.nattable and to add org.eclipse.nebula.widgets.nattable.core, ca.odell.glazedlists and org.eclipse.nebula.widgets.grid

• org.grits.toolbox.entry.ms.annotation.tablehelpers.ExtCheckBoxPainter - added gc.setForeground(GUIHelper.COLOR_BLACK); to line 58 so that the header text in the summary page is not grayed out

org.grits.toolbox.datamodel.ms.annotation.glycan.report plugin

• dependencies have been changed to remove org.eclipse.nebula.widgets.nattable and to add org.eclipse.nebula.widgets.nattable.core

org.grits.toolbox.entry.ms.annotation.glycan plugin

• dependencies have been changed to remove org.eclipse.nebula.widgets.nattable and to add org.eclipse.nebula.widgets.nattable.core and org.eclipse.nebula.widgets.grid
• The problem of clicking header cartoon in the summary page have been fixed with the addition of the following method to get sort configuration.

  @Override
  protected IConfiguration getSingleClickConfiguration() {
  	sortConfiguration = new GRITSSingleClickConfiguration(getGRITSTableDataObject().getTableHeader().size() > 1) {
  		@Override
  		public void configureRegistry(IConfigRegistry configRegistry) {
  			super.configureRegistry(configRegistry);
  			for(int i = 0; i < getGRITSTableDataObject().getLastHeader().size(); i++ ) {
  				GRITSColumnHeader header = getGRITSTableDataObject().getLastHeader().get(i);
  				if( header.getLabel().endsWith(".png") ) {
  					GlycanImageObject image = MSGlycanAnnotationTableDataObject.glycanImageProvider.getImage(header.getKeyValue());
  					Object ob = configRegistry.getSpecificConfigAttribute(CellConfigAttributes.CELL_PAINTER, DisplayMode.NORMAL, SORT_DOWN_CONFIG_TYPE);
  					if ( ob != null ) {
  						configRegistry.unregisterConfigAttribute(CellConfigAttributes.CELL_PAINTER, DisplayMode.NORMAL, SORT_DOWN_CONFIG_TYPE);
  						configRegistry.unregisterConfigAttribute(CellConfigAttributes.CELL_PAINTER, DisplayMode.NORMAL, SORT_UP_CONFIG_TYPE);
  					}
  					AutoResizeImagePainter imgPainter = new AutoResizeImagePainter(image, true, 5, true);
  					configRegistry.registerConfigAttribute(CellConfigAttributes.CELL_PAINTER, imgPainter, DisplayMode.NORMAL, header.getLabel());
  				} 
  			}		
                  }
  	};
  	return sortConfiguration;
  }
  

org.grits.toolbox.entry.ms.annotation.glycan.report plugin

• dependencies have been changed to remove org.eclipse.nebula.widgets.nattable and to add org.eclipse.nebula.widgets.nattable.core and org.eclipse.nebula.widgets.grid

org.grits.toolbox.importer.ms.annotation.glycan.simiansearch plugin

• dependencies have been changed to remove org.eclipse.nebula.widgets.nattable and to add org.eclipse.nebula.widgets.grid
• deprecated method is replaced
  • org.grits.toolbox.importer.ms.annotation.glycan.simiansearch.wizard.AddAdductsForm - removeAll is deprecated, use disposeAllItems instead
  • org.grits.toolbox.importer.ms.annotation.glycan.simiansearch.wizard.AddIonExchangeForm - removeAll is deprecated, use disposeAllItems instead
  • org.grits.toolbox.importer.ms.annotation.glycan.simiansearch.wizard.AddNeutralLossForm- removeAll is deprecated, use disposeAllItems instead

org.grits.toolbox.tools.databasebot plugin

• dependencies have been changed to remove org.eclipse.nebula.widgets.nattable

org.grits.toolbox.tools.gsl plugin

• dependencies have been changed to remove org.eclipse.nebula.widgets.nattable and to add org.eclipse.nebula.widgets.nattable.core

uk.ac.imperial.glycosciences.glycanarray plugin

• dependencies have been changed to remove org.eclipse.nebula.widgets.nattable and to add org.eclipse.nebula.widgets.nattable.core and ca.odell.glazedlists

org.grits.toolbox.entry.qrtpcr plugin

• dependencies have been changed to remove org.eclipse.nebula.widgets.nattable and to add org.eclipse.nebula.widgets.nattable.core, org.eclipse.nebula.widgets.nattable.extension.glazedlists and ca.odell.glazedlists
• org.grits.toolbox.entry.qrtpcr.table.QrtPCRNatTable - treeModel.isCollapseable(i) is replaced with treeModel.isCollapsible(i)