Changes between Version 8 and Version 9 of Service_Lab_Plugin

Timestamp:

03/14/2017 05:55:31 PM (6 years ago)

Author:

shan

Comment:

--

Service_Lab_Plugin

@@ -35 +35 @@
 - a product file ''GRITS.all.lab.service.product'' for ontology and workspace generation.
 
+Generated ontology
+ - Service Lab uses an ontology that is an extended version of the ontology in the experiment design plugin. To keep track of the version of ontology that was used to build the ontologies for Service Lab the version number is given an increment of 100 to the ontology of experiment design. For example - Service Lab ontology version 101.24.0 would mean it used 1.24.0 ontology from experiment design plugin to build the ontology for Service lab.
 
 __Note:__ Service Lab has changed format of its project spread sheet (spread sheets from which workspace is generated) several times. These were indicated by a number '''type''' in source code packages. The most recent type that was used for generating workspace was type 3.
@@ -99 +101 @@
  - for assigning tasks to samples
  - assigns tasks to each sample equally (if number of tasks is not divisible by number of samples then leaves all the tasks for user to assign)
+ - previous assignment by user is also stored in a file and is given priority for re-assignment
+  - class - PreviousTaskAssignmentsHandler
+  - Previous Assignment File
+   - name - '''IConfig.PROJECT_TASK_ASSIGNMENT_FILE_NAME'''
+   - location - '''${PROJECT_FOLDER}/${SERVICELAB_FOLDER}/${PREVIOUS_ASSIGNMENT_FILE}'''
 - SampleProtocolTaskMatcher
  - for matching task to protocols of each sample
@@ -137 +144 @@
 
 == Deployment ==
-Steps for deploying GRITS in Service Lab is described below :
+Following steps are to be followed each time GRITS is to be installed in Service Lab:
 
-1. Copy two ontologies before building - copy the two ontologies from '''ontology''' folder of Service Lab main plugin to '''ontology''' folder of Experiment designer plugin
- a. experimentdesignontology.owl
- b. localexperimentdesignontology.owl
-2. Use the product "'''GRITS.servicelab.product'''" in Service Lab Main plugin to build a product
-3. Deploy the product in Service Lab computer
-Adding new protocol variants (it would remove all local protocols and protocol variants)
-1. Get a copy of protocol variants from '''protocol variants''' folder of Service Lab main plugin (use the variants with matching version of the ontology that was used for deployment in step 1)
-2. Clean the '''org.grits.toolbox.editor.experimentdesigner''' folder inside config folder and copy the new protocol variants and extract it here
+1. Copy two ontologies before building
+ - copy the two ontologies from '''ontology''' folder of Service Lab main plugin to '''ontology''' folder of Experiment designer plugin
+  a. experimentdesignontology.owl
+  b. localexperimentdesignontology.owl
+2. Make sure the namespace file for Service Lab protocols (''namespaces_servicelab.xml'') is there in the experiment design plugin inside '''namespace''' folder
+3. Use the product "'''GRITS.servicelab.product'''" in Service Lab Main plugin to build a product as you would normally build
+4. Test and deploy the generated product in Service Lab computer
 
+__Note:__ Service Lab has its own set of ontologies and protocol variants. It cannot work merely with the experiment design ontologies. Each time a product is made for Service lab, the ontologies from the Service Lab Main plugin should be copied to build the product.
+
+Currently you can only generate a new set of protocol variants (it would remove all local protocols and protocol variants) and you do not have the option for adding protocol variants to the existing protocol variants. If a new set of protocol variants were generated for Service Lab then follow the following steps :
+1. Get a copy of protocol variants from '''protocol variants''' folder of Service Lab main plugin (use the protocol variants with matching version of the ontology that was used in step 1 for deployment)
+2. In Service Lab computer, clean the '''org.grits.toolbox.editor.experimentdesigner''' folder inside config folder and copy the new protocol variants and extract it here
+
+